PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.17G044800.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HSF
Protein Properties Length: 218aa    MW: 24834.1 Da    PI: 9.2942
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.17G044800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind101.67.1e-32381402102
                          HHHHHHHHHCTG...........GGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEE CS
         HSF_DNA-bind   2 Flkklyeilede...........elkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiwe 80 
                          Fl+k+y++le++           + k+++sw+ +gn f+v+ + ef++  Lp+yFkh+nf+SF+RQLn+YgFkk+++++         we
  Manes.17G044800.1.p  38 FLSKTYDLLEENeqesspkgahdDGKKIVSWNPQGNGFIVWSPAEFSELTLPRYFKHNNFSSFIRQLNTYGFKKTSSKQ---------WE 118
                          9*********555566666666699**************************************************9988.........** PP

                          EEESXXXXXXXXXXXXXXXXXX CS
         HSF_DNA-bind  81 FkhksFkkgkkellekikrkks 102
                          Fkh++F kg++++l +i rkk 
  Manes.17G044800.1.p 119 FKHEKFLKGSRDMLVEIGRKKC 140
                          *******************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.2E-3528133IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.6E-4034138IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.04E-2534138IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.4E-2838138IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MTKNNLSELN RSIISRRTSA AAALSSQQSP RTKSPAPFLS KTYDLLEENE QESSPKGAHD  60
DGKKIVSWNP QGNGFIVWSP AEFSELTLPR YFKHNNFSSF IRQLNTYGFK KTSSKQWEFK  120
HEKFLKGSRD MLVEIGRKKC EPSIFPAYLK AANEDNAATS AEENDNLLAL LEENNNLKRE  180
NLELQMQLAE FKALEIKLLD CVAQYMGSHH NKIKRLY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A5e-173813820120Heat shock factor protein 1
5d5u_B6e-173813829129Heat shock factor protein 1
5d5v_B6e-173813829129Heat shock factor protein 1
5d5v_D6e-173813829129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012091595.11e-107PREDICTED: heat stress transcription factor B-2a-like
TrEMBLA0A067JB201e-107A0A067JB20_JATCU; Uncharacterized protein
STRINGPOPTR_0004s04260.11e-93(Populus trichocarpa)
STRINGPOPTR_0011s05130.12e-93(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113572839
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.12e-34heat shock factor 4