PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.17G014300.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C3H
Protein Properties Length: 354aa    MW: 38345.2 Da    PI: 6.726
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.17G014300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH253.4e-0894118126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          +kt+lC+ f++ GtC+y  +C+FaH+
  Manes.17G014300.1.p  94 FKTKLCCKFRA-GTCPYITNCNFAHS 118
                          69*********.*************8 PP

2zf-CCCH18.63.3e-06166191126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          yk + C+ f+    C+yGd+C+F H+
  Manes.17G014300.1.p 166 YKGRHCKKFYTEEGCPYGDNCTFLHD 191
                          78888********************7 PP

3zf-CCCH41.81.8e-13234259126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          +kt++C+ +  tG+C++G++C+FaHg
  Manes.17G014300.1.p 234 WKTRICNKWELTGYCPFGNKCHFAHG 259
                          8************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.13E-791124IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.9E-1492126IPR000571Zinc finger, CCCH-type
SMARTSM003560.003593119IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.8493120IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-594118IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-7164193IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-9164193IPR000571Zinc finger, CCCH-type
SMARTSM003560.058165192IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.23165193IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.3E-17229263IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-10230264IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.225233261IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-9233260IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-10234259IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MDYGGDFSSA NVVHVIPGAG PENWFPNSMD SNSVWATEDD YHAWSNSDGP SDNIPSISDI  60
QSSQTRSGSE PPNKKSKNNS QEMSSKKSFG KMFFKTKLCC KFRAGTCPYI TNCNFAHSIE  120
ELRRPPPNWQ EIVSAQEEEK GNVVEMREGF QIPSVGGFGG ESQRSYKGRH CKKFYTEEGC  180
PYGDNCTFLH DEQSKNRESV AISLGPGAYG GASLGEGVSG GGSGNGGNVK PSNWKTRICN  240
KWELTGYCPF GNKCHFAHGA AELHRYGGGL MESEAKDGSA PAETKQGGVP SKSPADAVVA  300
SVTTVPHSDV YHAGVPSQRS SILIQRPGQR THEKWKGPDK ISRIYGDWID DVE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012077912.10.0PREDICTED: zinc finger CCCH domain-containing protein 12
SwissprotQ9LQM31e-128C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLB9SNT20.0B9SNT2_RICCO; Nucleic acid binding protein, putative
STRINGPOPTR_0003s09240.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77513342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-119C3H family protein