PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.16G116000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family M-type_MADS
Protein Properties Length: 295aa    MW: 33572.5 Da    PI: 8.8792
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.16G116000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.71.5e-131151343
                         --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
               SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                         i n+  r vt+ kR++g++KK +   +LCd++++vii++s+
  Manes.16G116000.1.p 11 ITNEKCRMVTYHKRKKGLIKKMQKFRILCDVDACVIILGSN 51
                         8999**********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.4E-12161IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.465151IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.27E-16152IPR002100Transcription factor, MADS-box
CDDcd001201.18E-15251No hitNo description
PRINTSPR004042.7E-8323IPR002100Transcription factor, MADS-box
PfamPF003193.3E-141151IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-82338IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-83859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MGRGKLNMEL ITNEKCRMVT YHKRKKGLIK KMQKFRILCD VDACVIILGS NFNDLPIGVE  60
TCPSDGYEMN ERRKDQDLSS FFVARRKKLD DEVARLRKAC LKAKFPAWDN RLNLWNYHEL  120
TLLDEAIKAD HYLMFGSTSK FIDEEVSSSN NFKSSLNAST LANACHQKNM ELEFHEQGQL  180
AFVNPSDQTL PQMLPFNLNS LNSPMLMMAN GVDKGFLGSY YPSAANLMMN YRPRGCPISY  240
SGLSRQLSAG LPNVSSRMHN PQLSEFCDIN EFEMRNKKDS VKHESRSIKS SILQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17187RRKDQDLSSFFVARRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.16G116000.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021596293.11e-114uncharacterized protein LOC110602973
TrEMBLA0A2C9UAQ10.0A0A2C9UAQ1_MANES; Uncharacterized protein
STRINGcassava4.1_023251m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53431111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.17e-16M-type_MADS family protein