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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
Previous version:
v3.0
v4.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.16G116000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 295aa MW: 33572.5 Da PI: 8.8792 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 41.7 | 1.5e-13 | 11 | 51 | 3 | 43 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i n+ r vt+ kR++g++KK + +LCd++++vii++s+ Manes.16G116000.1.p 11 ITNEKCRMVTYHKRKKGLIKKMQKFRILCDVDACVIILGSN 51 8999**********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 9.4E-12 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 17.465 | 1 | 51 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.27E-16 | 1 | 52 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 1.18E-15 | 2 | 51 | No hit | No description |
PRINTS | PR00404 | 2.7E-8 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.3E-14 | 11 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.7E-8 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.7E-8 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MGRGKLNMEL ITNEKCRMVT YHKRKKGLIK KMQKFRILCD VDACVIILGS NFNDLPIGVE 60 TCPSDGYEMN ERRKDQDLSS FFVARRKKLD DEVARLRKAC LKAKFPAWDN RLNLWNYHEL 120 TLLDEAIKAD HYLMFGSTSK FIDEEVSSSN NFKSSLNAST LANACHQKNM ELEFHEQGQL 180 AFVNPSDQTL PQMLPFNLNS LNSPMLMMAN GVDKGFLGSY YPSAANLMMN YRPRGCPISY 240 SGLSRQLSAG LPNVSSRMHN PQLSEFCDIN EFEMRNKKDS VKHESRSIKS SILQ* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 71 | 87 | RRKDQDLSSFFVARRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.16G116000.1.p |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021596293.1 | 1e-114 | uncharacterized protein LOC110602973 | ||||
TrEMBL | A0A2C9UAQ1 | 0.0 | A0A2C9UAQ1_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_023251m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF534 | 31 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G55690.1 | 7e-16 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.16G116000.1.p |