PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.16G105900.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C3H
Protein Properties Length: 388aa    MW: 42766.9 Da    PI: 7.7731
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.16G105900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.73.9e-08137157526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                           C++f++ G Ck Gd C FaHg
  Manes.16G105900.1.p 137 ACPDFRK-GNCKKGDACEFAHG 157
                          7******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.0884121IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-6132158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.751133159IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-5136159IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-6137157IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.427167191IPR000571Zinc finger, CCCH-type
SMARTSM0035616167190IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MMLGERHRPN PTIHVPPWAL LDDTNSDANP SSPLTSHSGN AAIASDYNPC YLQEALAALQ  60
RYLPSNEPDL DSDSELLGLE PGSPVDAYSC DHFRMFEFKV RRCARGRSHD WTECPYAHPG  120
EKARRRDPRK YHYSGTACPD FRKGNCKKGD ACEFAHGVFE CWLHPARYRT QPCKDGTNCR  180
RRVCFFAHTA DQLRVLPQQS PRSLNSVDSY DGSPLRQARE AYCAKSVPFL ASPGSISPPA  240
TPPLESPPMS PITQSLSRSL GSNSINEIVV SLRNLQLGKV NSMPPSCNVH VGGSGFGSPR  300
GSMIRSGFCS LPSTPSGGPT RSGLRYRDVW ENVCEEEPAM ERVESGRDLR TKMFEKLSKE  360
NSLGRVDPDP DQSSKAPDVG WVSELLK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012076821.10.0PREDICTED: zinc finger CCCH domain-containing protein 20
SwissprotQ9M0G21e-150C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A067KPP40.0A0A067KPP4_JATCU; Uncharacterized protein
STRINGVIT_11s0016g02790.t011e-179(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20563176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.11e-134C3H family protein