PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.16G053700.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family Trihelix
Protein Properties Length: 328aa    MW: 36471.1 Da    PI: 10.3005
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.16G053700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix59.58.2e-191896273
             trihelix  2 WtkqevlaLiearremeerlrrgk.......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrts 73
                         Wt +e+++Liea+r ++er  +++        ++ +W++v +++r++g+ rs++qC++kw+nl ++ykk+++ e++ ++
  Manes.16G053700.1.p 18 WTLSETMVLIEAKRMDDERRMKSSdsegrskPAELRWKWVEDYCRRKGCLRSQNQCNDKWDNLMRDYKKVRDYERRIAE 96
                         **************77777775422333333999***************************************998754 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.9691081IPR017877Myb-like domain
PfamPF138372.0E-131792No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MADQGGNIVI RDYRKGNWTL SETMVLIEAK RMDDERRMKS SDSEGRSKPA ELRWKWVEDY  60
CRRKGCLRSQ NQCNDKWDNL MRDYKKVRDY ERRIAERGVG NEASSSSYWK LEKIERKEEN  120
LPSNMLIQVY EALVEVVERR GTQKVVITAG GSASNPRPIT TVRPPLSPLL QRQISVPIPV  180
LAPPPRPLPP ALQAQPSPPL PYSQTPLPAV DSDTSEHSNS PAKRRRRRGG GGGGASSGGS  240
ASGSTSHEVG TAISKSASSI AEAIQACEER KERRHRDLLS LHERRLKIEE SRTELNRQGI  300
NGLVDSINNL ANSILALASH KHQSTPK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1222227KRRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.16G053700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021598083.10.0uncharacterized protein LOC110604244 isoform X1
TrEMBLA0A2C9U9X90.0A0A2C9U9X9_MANES; Uncharacterized protein
STRINGcassava4.1_031132m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68043242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.11e-61Trihelix family protein