PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.16G030100.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C3H
Protein Properties Length: 842aa    MW: 94075.7 Da    PI: 4.308
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.16G030100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.72e-08341360525
                          --SGGGGTS--TTTTT-SS-S CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                          +C+ffa+ G+C +G++C+F H
  Manes.16G030100.1.p 341 ICNFFAK-GWCIRGSSCRFLH 360
                          8******.************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.896336363IPR000571Zinc finger, CCCH-type
SMARTSM003560.002336362IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-6336360IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.001341360IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-6341360IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 842 aa     Download sequence    Send to blast
MPPSSSTAAR TAEYNDDHSP PSSDSPAEIS DSDLDNREQE EPEIEVEEQE EVHNGNVDEE  60
DMEEEEEYEE IEVEEEEEIE EEIEVEEEEE EEEEEEEEEE EEEEEEEEVV EVEEEEEEEE  120
EDDDDDDDDK LDSSKESNVE LNDVGQHKEV EGQLVLSSTL GRSELGLQSN SHIQDSISNP  180
KLSGPLDESL TFQEKVHVNY EDSECCKSGD CLLTTGGNES QQFAVEKDVE AFVKKNSQEL  240
SKHNGDCKVH LCNDKSISDE TTSPSIARNE VSNALAIKDC LSMDTNGILD SEVEVKPMEM  300
QPEDKEQTAS RFSRVVTSEI RAQSPSPSAE FKDWNKRPAV ICNFFAKGWC IRGSSCRFLH  360
INNKADNAKE QLEGDAAVSH LSKGDQFDEG LKNIMEKPKL SGFPDLVASS IGNGSAFPSR  420
FSSEKILPFE NGESQLFHQL DEQQKSSSLP REDLSRGVHL HPDTQQFPSS KGDLGVSSSL  480
KDLGKENLRQ SWPASDYGRY ASAINRGPSF SLTSSMNISP LGSQKLLGND RDFCASRSSP  540
ILQTASPRSG SELENVPLTS VSKDPLCYTE HKAKIFSNDW EPSIPFRPSF FITHTMTSSP  600
GSQYDPLRDS IDLPTAGYKL PFKFSFVSQV TSNLNSSHLP TYGNSVSQIL GPECDNDKST  660
VSSHSRFHEN VLGQNCFTPG KVVGGTSAVN VQKETKPKEE NTSSSSHLNN VPNKRKIDID  720
CDSRQTNDGP RRKKDLKVDR VRQKNEMDVE QKTDGESRTL RHFRAALVDF VKELLRPTWR  780
EGHLSKDAHN KIVKKTVEKV LCTLQPHQIP TTIESIKQYL SSCQPKIAKL IEGYCTKYGK  840
S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1713733KRKIDIDCDSRQTNDGPRRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006377394.10.0zinc finger family protein
RefseqXP_011043418.10.0PREDICTED: protein FRIGIDA-ESSENTIAL 1 isoform X1
TrEMBLU5FZ240.0U5FZ24_POPTR; Zinc finger family protein
STRINGPOPTR_0011s05550.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108052733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.13e-50C3H family protein