PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.15G145000.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family B3
Protein Properties Length: 296aa    MW: 33645.2 Da    PI: 9.3128
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.15G145000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.87.9e-131296898
                         -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                   B3  8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                         +++ + + l++p +f++++g++   s   ++  + g +W v l   k ++++++ +GW+eF ++  +++g f+vF+++g+  f  +v++f+
  Manes.15G145000.2.p 12 ANTIRDKKLRIPDNFVKKFGND--LSAFGRISVPGGPVWPVGL--IKADDKFWFHEGWQEFMESYSIRVGYFLVFRYEGHAVF--TVHIFN 96
                         56677888***********877..677788999**********..9*******************************998888..888885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.43E-20397IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-20398IPR015300DNA-binding pseudobarrel domain
CDDcd100176.45E-17496No hitNo description
PROSITE profilePS5086312.435598IPR003340B3 DNA binding domain
SMARTSM010193.0E-11698IPR003340B3 DNA binding domain
PfamPF023623.7E-101296IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MPRPYFYKLI LANTIRDKKL RIPDNFVKKF GNDLSAFGRI SVPGGPVWPV GLIKADDKFW  60
FHEGWQEFME SYSIRVGYFL VFRYEGHAVF TVHIFNLSAS EISYQSNSLS GRRYLAFEEM  120
EDDDLIEYLS SSSPFLVPNS LKRNLHSSKG ASISHATNQD ARDVGVQFNA IEQKNYKDDV  180
KFYNPDGEIQ KPKKPGRKRK NDPNEMQPAA LQGDEVEMRF RFYQSASARK RTVTAEERER  240
AINAAKAFEP INPFCRVVLR PSYLYRGCIM GLLNSSFVMG SNGLSDAFIG EAGLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-232212721566B3 domain-containing transcription factor VRN1
4i1k_B1e-232212721566B3 domain-containing transcription factor VRN1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.15G145000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021595600.10.0B3 domain-containing transcription factor VRN1-like isoform X3
SwissprotQ8L3W12e-85VRN1_ARATH; B3 domain-containing transcription factor VRN1
TrEMBLA0A2C9UG890.0A0A2C9UG89_MANES; Uncharacterized protein
STRINGcassava4.1_006855m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-87B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Kumar A,Singh A,Panigrahy M,Sahoo PK,Panigrahi KCS
    Carbon nanoparticles influence photomorphogenesis and flowering time in Arabidopsis thaliana.
    Plant Cell Rep., 2018. 37(6): p. 901-912
    [PMID:29541883]