PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.15G145000.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family B3
Protein Properties Length: 360aa    MW: 41485.3 Da    PI: 9.5276
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.15G145000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.31.1e-121296898
                         -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                   B3  8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                         +++ + + l++p +f++++g++   s   ++  + g +W v l   k ++++++ +GW+eF ++  +++g f+vF+++g+  f  +v++f+
  Manes.15G145000.1.p 12 ANTIRDKKLRIPDNFVKKFGND--LSAFGRISVPGGPVWPVGL--IKADDKFWFHEGWQEFMESYSIRVGYFLVFRYEGHAVF--TVHIFN 96
                         56677888***********877..677788999**********..9*******************************998888..888885 PP

2B356.64.7e-18258348498
                          E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                   B3   4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                          vl ps+  + ++++lp  fae++ +g++     ++l+  +g++W+v++ yr+++    l++GW eF  +n+L egD+++F+l+++++  l
  Manes.15G145000.1.p 258 VLRPSYLYRGCIMYLPSCFAEKNlNGVSG---FIKLQFCDGKQWSVRCLYRGGR--AKLSQGWYEFTLENNLGEGDVCIFELMRSRDIVL 342
                          78899******************876743...49999999********665555..66*************************9999999 PP

                          EEEEE- CS
                   B3  93 vvkvfr 98 
                          +v+vfr
  Manes.15G145000.1.p 343 KVTVFR 348
                          999998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.6E-20398IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-20397IPR015300DNA-binding pseudobarrel domain
CDDcd100175.67E-16496No hitNo description
PROSITE profilePS5086312.435598IPR003340B3 DNA binding domain
SMARTSM010193.0E-11698IPR003340B3 DNA binding domain
PfamPF023625.4E-101296IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.9E-23247348IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-23249348IPR015300DNA-binding pseudobarrel domain
CDDcd100173.69E-21253348No hitNo description
PROSITE profilePS5086313.338255350IPR003340B3 DNA binding domain
SMARTSM010192.3E-17255350IPR003340B3 DNA binding domain
PfamPF023624.5E-16258348IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MPRPYFYKLI LANTIRDKKL RIPDNFVKKF GNDLSAFGRI SVPGGPVWPV GLIKADDKFW  60
FHEGWQEFME SYSIRVGYFL VFRYEGHAVF TVHIFNLSAS EISYQSNSLS GRRYLAFEEM  120
EDDDLIEYLS SSSPFLVPNS LKRNLHSSKG ASISHATNQD ARDVGVQFNA IEQKNYKDDV  180
KFYNPDGEIQ KPKKPGRKRK NDPNEMQPAA LQGDEVEMRF RFYQSASARK RTVTAEERER  240
AINAAKAFEP INPFCRVVLR PSYLYRGCIM YLPSCFAEKN LNGVSGFIKL QFCDGKQWSV  300
RCLYRGGRAK LSQGWYEFTL ENNLGEGDVC IFELMRSRDI VLKVTVFRVL ENARHMNRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-7222135115144B3 domain-containing transcription factor VRN1
4i1k_B2e-7222135115144B3 domain-containing transcription factor VRN1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.15G145000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021595599.10.0B3 domain-containing transcription factor VRN1-like isoform X2
SwissprotQ8L3W11e-135VRN1_ARATH; B3 domain-containing transcription factor VRN1
TrEMBLA0A2C9UG380.0A0A2C9UG38_MANES; Uncharacterized protein
STRINGcassava4.1_006855m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21473485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-138B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Kumar A,Singh A,Panigrahy M,Sahoo PK,Panigrahi KCS
    Carbon nanoparticles influence photomorphogenesis and flowering time in Arabidopsis thaliana.
    Plant Cell Rep., 2018. 37(6): p. 901-912
    [PMID:29541883]