PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.15G103200.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C3H
Protein Properties Length: 302aa    MW: 31736.8 Da    PI: 9.3559
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.15G103200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.94.5e-10106131227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          kt+lC+ +     Ck+Gd+C+FaHg+
  Manes.15G103200.1.p 106 KTRLCNKYNTAEGCKFGDKCHFAHGE 131
                          9***********************96 PP

2zf-CCCH37.44.1e-12268292126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          +kt+lC +fa+ G C +GdrC+FaHg
  Manes.15G103200.1.p 268 FKTKLCENFAK-GSCTFGDRCHFAHG 292
                          69*********.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.73764IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.0423765IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.46E-63863IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-73962IPR000571Zinc finger, CCCH-type
PfamPF146081.84562No hitNo description
Gene3DG3DSA:4.10.1000.102.0E-14102136IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-8103135IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.591104132IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-4104131IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-7106131IPR000571Zinc finger, CCCH-type
SuperFamilySSF547913.94E-15167247IPR004088K Homology domain, type 1
SMARTSM003224.4E-12174244IPR004087K Homology domain
PROSITE profilePS5008413.858175239IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.6E-15175246IPR004088K Homology domain, type 1
CDDcd001057.20E-14177239No hitNo description
PfamPF000135.2E-11177241IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.101.4E-16266299IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.197267294IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7267293IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-9267297IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9268292IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MEYGGGRKRG RPEAALNGNG GPKKSKQEME SFPTGIGSKS KPCTKFFSTS GCPFGEGCHF  60
LHYVPGGFKA VSQMLNLGGN PSLPPASRNA GVPPSFPDGS SPPALKTRLC NKYNTAEGCK  120
FGDKCHFAHG EWELGKPTGP SYEDPRSIGP ISGRMGRQME PPHQGFGAAS SFGASATAKI  180
SINASLAGAI IGKNGVNSKQ ICRLTGAKLS IRDHETDPNL RNIELEGTFD QIDQASAMVR  240
ELIGNVSQGS GPPIKNAAIH SSGPANNFKT KLCENFAKGS CTFGDRCHFA HGTEELRKPG  300
L*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012088179.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-119C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A067JK640.0A0A067JK64_JATCU; Uncharacterized protein
STRINGGLYMA20G39160.11e-163(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.13e-54C3H family protein