PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.15G024300.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family NF-YC
Protein Properties Length: 258aa    MW: 28714.3 Da    PI: 6.3978
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.15G024300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC178.37.1e-56781811101
                NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd 87 
                          ql++fw++q   ie++tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trt+
  Manes.15G024300.1.p  78 QLQTFWTNQyqeIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTE 167
                          89******9999****************************************************************************** PP

                NF-YC  88 ifdflvdivprdel 101
                          ifdflvdivpr++l
  Manes.15G024300.1.p 168 IFDFLVDIVPREDL 181
                          ***********987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471133.02E-3357172IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.3E-3792164IPR009072Histone-fold
PfamPF008081.6E-21100163IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MDQRGRGQPS AAAEVGSRAP VPYGISAYQS NQMGPSATGP LQSAAQPSGG TASQAQLAQH  60
QLAYQHIHQQ QQEQLQQQLQ TFWTNQYQEI EQTTDFKNHS LPLARIKKIM KADEDVRMIS  120
AEAPVIFARA CEMFILELTL RSWNHTEENK RRTLQKNDIA AAITRTEIFD FLVDIVPRED  180
LKDEVLASVP RGSLPVAGPA EAMPYYYMSP QFAPQITAPG KSVGQPVVDQ NLYVQHARPY  240
VTHPIWPQQQ QQPPADS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C2e-41641784119HapE
4g92_C2e-41641784119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150156RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011010746.11e-138PREDICTED: nuclear transcription factor Y subunit C-9-like
SwissprotQ8L4B21e-83NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLU5G1091e-136U5G109_POPTR; Uncharacterized protein
STRINGPOPTR_0010s03730.11e-136(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.49e-80nuclear factor Y, subunit C9