PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.14G154900.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family AP2
Protein Properties Length: 563aa    MW: 61094.2 Da    PI: 7.4183
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.14G154900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.96.6e-15182240255
                  AP2   2 gykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           ++GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Manes.14G154900.1.p 182 IFRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 240
                          69******************666664477446*************************98 PP

2AP247.93.3e-15283334155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Manes.14G154900.1.p 283 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 334
                          78****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.85E-22181250No hitNo description
SuperFamilySSF541714.25E-17181250IPR016177DNA-binding domain
SMARTSM003802.3E-29182254IPR001471AP2/ERF domain
PfamPF008477.4E-12182240IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-15182249IPR001471AP2/ERF domain
PROSITE profilePS5103218.808182248IPR001471AP2/ERF domain
PRINTSPR003678.1E-6183194IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-18283344IPR016177DNA-binding domain
PfamPF008474.8E-10283334IPR001471AP2/ERF domain
CDDcd000181.76E-24283344No hitNo description
PROSITE profilePS5103219.072284342IPR001471AP2/ERF domain
SMARTSM003801.2E-32284348IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-18284343IPR001471AP2/ERF domain
PRINTSPR003678.1E-6324344IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MNMDSSSHTQ NWLGFSLSTH HHMNMSIPSS DPSHLCLFEA FNSSTARVGA VDRAQEEDAT  60
AGNTTVTDLS IFTRTGPKLE DFLGCSTTTA PHSQQPQHPP PPPPPPPSVQ SLCPFPTETP  120
VTNASDTSEI YDSELKTIAA SFLRGFSSTT EQTDTTQKQQ SIVQTESAPR KTVDTFGQRT  180
SIFRGVTRHR WTGRYEAHLW DNSCRREGQS RKGRQVYLGG YDKEEKAARA YDLAALKYWG  240
PTTTTNFPIS NYQKELEEMK HMTRQEFVAS LRRKSSGFSR GASVYRGVTR HHQHGRWQAR  300
IGRVAGNKDL YLGTFSTQEE AAEAYDIAAI KFRGLNAVTN FDMSRYDVKS IANSNLPIGG  360
ISNKSKNSLD SASETKSIDG CRSADERDLS SASSVTFASQ PPPATSTLSF AMPIKQDPSD  420
FWSNILGCQN PTTTSTSLNN IGKNANCNVA QSVLFQSSTS FPSTTAFNME FNNGSSTVHD  480
SNQNGLLFSG GYLQQQSGGG GGGVSANSSS SVPFATPIAL TSSGSSYEGN SSYGSWIAQS  540
LHSFQSAKPN LSMFQTPIFG ME*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011009808.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-162AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLU5GBJ10.0U5GBJ1_POPTR; Uncharacterized protein
STRINGPOPTR_0006s18330.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125622735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-149AINTEGUMENTA-like 5