PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.14G130400.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C3H
Protein Properties Length: 345aa    MW: 38310.1 Da    PI: 8.0373
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.14G130400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.65e-0986111127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          +kt+ C  f+  G Ck G++C+FaHg+
  Manes.14G130400.1.p  86 FKTRMCAKFRT-GNCKNGENCNFAHGM 111
                          699******99.*************95 PP

2zf-CCCH29.61.2e-09149172225
                          -S---SGGGGTS--TTTTT-SS-S CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                          k++lC+ f+ + +C+yGdrC+F H
  Manes.14G130400.1.p 149 KMKLCKKFYNGEECPYGDRCNFLH 172
                          789*******66************ PP

3zf-CCCH42.11.5e-13233259127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          +kt+lC  +  tG+C++G++C+FaHg+
  Manes.14G130400.1.p 233 WKTKLCTKWETTGQCPFGEKCHFAHGQ 259
                          8************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.3E-1581118IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-883116IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.25385112IPR000571Zinc finger, CCCH-type
SMARTSM003565.3E-585111IPR000571Zinc finger, CCCH-type
PfamPF006427.8E-686111IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.333147175IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-7147174IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-4147174IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-9149173IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-7149172IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-17228264IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-10231263IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.535232260IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-6232259IPR000571Zinc finger, CCCH-type
PfamPF006427.8E-11233259IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MSYSDSRSPF MSTQLSYQSG SDAIGIWPQF SLNNAEQFDS LSQFEQLQPP YKRPRNCEDS  60
SSLSVNSKMP LPNNLPVNKG TTNIFFKTRM CAKFRTGNCK NGENCNFAHG MQDLRQPPPN  120
WQELVGVGAR GEEDRSAGNW DDDQRIIHKM KLCKKFYNGE ECPYGDRCNF LHEDPSKFRD  180
DVGRFRESSA ISIGTTGQPM VPGTGGLNAT EVNKPVNNTG SDAYRANMKP VYWKTKLCTK  240
WETTGQCPFG EKCHFAHGQA ELQVPGGRAE GEPGNAGSIL AKPPPILANN VSPMMTASVP  300
NVIEEGQSKK CLFKWKGPKK INRIYGDWLD DLPLVQNLPN QVES*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002524459.10.0PREDICTED: zinc finger CCCH domain-containing protein 39
SwissprotQ9LT811e-102C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLB9SEP00.0B9SEP0_RICCO; Putative uncharacterized protein
STRINGPOPTR_0009s13310.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83333345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.11e-104C3H family protein