PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.14G123000.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family NF-YA
Protein Properties Length: 215aa    MW: 23441.8 Da    PI: 7.3709
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.14G123000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA1011.2e-31118174158
            CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                          +ep++VNaKQy++Il+RRq+Rak+e+ekk  +ksrkpylheSRh hAlrR+Rg gGrF
  Manes.14G123000.1.p 118 EEPVFVNAKQYHGILRRRQSRAKAESEKKA-IKSRKPYLHESRHLHALRRARGLGGRF 174
                          69***************************9.**************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.3E-35116177IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.094117177IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.5E-26119174IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.6E-23120142IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860122142IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.6E-23151174IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MTSSMHDPSD NSEPNEQQEH AESQSQSSSP ATALVHPVMS IPNVQYATSP QLGSGHAMAA  60
AAAAAAAYPY PDPYYRSIFA PYDAQPYPPP PYGGQPMVHL QLMGIQQAGV PLPSDAVEEP  120
VFVNAKQYHG ILRRRQSRAK AESEKKAIKS RKPYLHESRH LHALRRARGL GGRFLNSKKN  180
ENQQEDEDSP GVRSQSNINL NSDKNDIASS DNQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-20117182166NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.14G123000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021591955.11e-156nuclear transcription factor Y subunit A-7-like
RefseqXP_021591956.11e-156nuclear transcription factor Y subunit A-7-like
RefseqXP_021591957.11e-156nuclear transcription factor Y subunit A-7-like
RefseqXP_021591958.11e-156nuclear transcription factor Y subunit A-7-like
SwissprotQ84JP12e-65NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBLA0A251JTN31e-154A0A251JTN3_MANES; Uncharacterized protein
STRINGcassava4.1_016099m1e-118(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53793355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.22e-36nuclear factor Y, subunit A7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]