PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.14G045600.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 526aa    MW: 57339.4 Da    PI: 6.0678
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.14G045600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.91.3e-11343385754
                          HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                          ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A+eY+k+L
  Manes.14G045600.1.p 343 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 385
                          79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.58336385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.16E-17339410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-14342391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-9342385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.20E-12343389No hitNo description
Gene3DG3DSA:4.10.280.108.6E-16343398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048731.36E-7455514No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MLSGLNGTVW MGEKEAQDST ANNNINNGCD VIESKQEMGS LSTFKSMLEV EDDWYVTNTS  60
IHNHQDTIRD ITFSPNLADP DNLLLHSVDS SSSCSPTSSI FNNLDPSQVH HFMHSKPTLS  120
SLLNVVSNNP LEHGFDLGEI GFLENQATTT TTTNAAGVLA NYIGFSSNNQ INTSNLCSDP  180
PFSTTRMLQL PQNGPDFTGF RGFDESSGNT LFSSRSKLLR PLETFPSIGA QPTLFQKRAA  240
LRKNLGALSG IEIDKGKREM TQFGGENEKK RKLGNVDDVL EDVSIDGSGL NYDSDELTEN  300
TKMEEIGKNG GNSSNANSSI TGCGVGVGDQ KGKKKGLPAK NLMAERRRRK KLNDRLYMLR  360
SVVPKISKMD RASILGDAIE YLKELLQRIN DLHNELESTP PGSSLTPTSF HPLTPTPSTL  420
PSHIKDKLCP SSLPSPNGQP ARVEVRVREG RAVNIHMFCG RRPGVLLSTM RALDNLGLDI  480
QQAVISCFNG FAMDIFQAEQ IKGQDVHPEE IKAILLDSAG FHGMI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1332350KKKGLPAKNLMAERRRRKK
2344351ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001306859.10.0transcription factor ICE1-like
SwissprotQ9LSE21e-140ICE1_ARATH; Transcription factor ICE1
TrEMBLA0A0F6T6U70.0A0A0F6T6U7_JATCU; Inducer of CBF expression 1
STRINGPOPTR_0012s10780.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24143482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-111bHLH family protein