PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.14G003100.3.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family NF-YA
Protein Properties Length: 210aa    MW: 22853.5 Da    PI: 10.254
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.14G003100.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.87.7e-333187158
            CBFB_NFYA  1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58
                         +ep+YVNaKQyq+Il+RRq+Rak+e ekkl +k+rkpylheSRh+hA+rR+Rg+gGrF
  Manes.14G003100.3.p 31 QEPVYVNAKQYQGILRRRQARAKAELEKKL-IKARKPYLHESRHQHAMRRARGTGGRF 87
                         69****************************.**************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005218.1E-362990IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.3613090IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.0E-283287IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.6E-243355IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS0068603555IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.6E-246487IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MMAAYGHQPM SYPHLIGLHH ARMPLPQEVA QEPVYVNAKQ YQGILRRRQA RAKAELEKKL  60
IKARKPYLHE SRHQHAMRRA RGTGGRFAKK IHADASNNTT EGTSNDPGPV LSSQSGSGSS  120
SISEPLPSDS ADRWIFPHGE QGTIASQVLV TSEAKNHVHG GTFYLKHNGL QTLTHHSLAG  180
EKGEEGDCSG QQRGSISSNQ ASQRPLSIQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-1931103274NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.14G003100.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021591865.11e-153nuclear transcription factor Y subunit A-1-like isoform X1
RefseqXP_021591866.11e-153nuclear transcription factor Y subunit A-1-like isoform X1
RefseqXP_021591867.11e-153nuclear transcription factor Y subunit A-1-like isoform X1
RefseqXP_021591869.11e-153nuclear transcription factor Y subunit A-1-like isoform X2
SwissprotQ945M99e-52NFYA9_ARATH; Nuclear transcription factor Y subunit A-9
TrEMBLA0A251JPR91e-151A0A251JPR9_MANES; Uncharacterized protein
TrEMBLA0A2C9UIM51e-153A0A2C9UIM5_MANES; Uncharacterized protein
STRINGcassava4.1_007505m1e-151(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.13e-35nuclear factor Y, subunit A9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]