PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.14G002700.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C3H
Protein Properties Length: 616aa    MW: 67936.6 Da    PI: 5.9013
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.14G002700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.61.6e-06270290526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          +C+++++ G C++Gd C ++Hg
  Manes.14G002700.2.p 270 PCPDHRK-GACRRGDLCEYSHG 290
                          7******.*************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM002480.0256090IPR002110Ankyrin repeat
PROSITE profilePS5029716.57360156IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.71E-1561144IPR020683Ankyrin repeat-containing domain
PfamPF127963.3E-962129IPR020683Ankyrin repeat-containing domain
CDDcd002048.82E-1562149No hitNo description
Gene3DG3DSA:1.25.40.201.0E-1662143IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0195127IPR002110Ankyrin repeat
PROSITE profilePS5008811.72895130IPR002110Ankyrin repeat
SMARTSM003560.015265291IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-4270290IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.483270292IPR000571Zinc finger, CCCH-type
SMARTSM0035686300323IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 616 aa     Download sequence    Send to blast
MDMDYTNGTV EAEHSFSVLL EYAADNDVEG FKRSVCDESE IMEVGLWYGH QRLFKRGILE  60
LRTPLMVAAT YGSVEVVKLI LSLPEVDVNF SCGTDKSTAL HCAAAGGSVD AINAVKLLLL  120
AGADPNSTDA NGHRPIDVVV ASPNFPYLKT ALVKLLKNSV NHWDLQFSPS ISLSSEDGSS  180
SSVSGSVLSP TTSKLHDVRV SSAKKEYPVD PTVPDIMSSI YTTDEFRMFS FKIQPCSRAY  240
SHDWTECPFV HPGENARRRD PRRFHYSCLP CPDHRKGACR RGDLCEYSHG IFECWLHPAQ  300
YRTRLCKDGT SCIRRVCFFA HTSDELRPLY MSNGAAAADF TAALSNLSGS PSAVSAMSPL  360
SFTPPISPSS NDLCLSMSWP QCNILNLKTP SNNLQASRLR TPLNAKDIPS EEFNRFQDFE  420
LLQLRLLNEL SCVSQPHYNS SSATLKQLNA TDVDRFLSSK VSSLQNTYQL GAAPVFFPSY  480
NPAVINEFQP QSIPSPIKTG VFSPKNVDYS PLQASFDSSS PMKMSPRLNE LTSPMSSQLP  540
TLPQSEKLQL QLGSLRSQEL GVNADWSIRA DEVGLLQKLC SNEKSVDEPD VSWVQSVLKE  600
SPSETEEKQI SFRFS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015571359.10.0PREDICTED: zinc finger CCCH domain-containing protein 56 isoform X1
RefseqXP_002513504.10.0PREDICTED: zinc finger CCCH domain-containing protein 56 isoform X1
SwissprotQ9LXV40.0C3H56_ARATH; Zinc finger CCCH domain-containing protein 56
TrEMBLB9RID50.0B9RID5_RICCO; Transcription factor, putative
STRINGVIT_06s0004g02160.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12850.10.0CCCH-type zinc finger protein with ARM repeat domain