PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.13G130900.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family B3
Protein Properties Length: 315aa    MW: 35628.1 Da    PI: 8.9665
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.13G130900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.44.6e-175801899
                         --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                   B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                         +pkkf+++hg++ ++   ++l+  +g  W+++l  +k+ g+++l+kGW+eF+k + L+ g f+vFk++g+  f  +v +++k
  Manes.13G130900.2.p  5 IPKKFIRKHGKDLPS--PVILKVANGSIWKIEL--SKCHGEVWLEKGWQEFAKHHSLDHGYFLVFKYEGHGHF--CVFILDK 80
                         9********988555..59999***********..********************************997777..7777665 PP

2B340.16.5e-13219309196
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrs 88 
                          ffk  +  d  k++++++p +f +++ ++   + tl++     r W vkl   ++s++  + + +GW+ F+++n L+ gD+++F+l++ +
  Manes.13G130900.2.p 219 FFKSVVWLDKRKNSIVCVPVSFSRRNIKDCVANLTLQF---GDRLWPVKL--IRYSKWnvVRFCSGWSVFARENSLEMGDVCIFELIKID 303
                          89999999******************666444444444...44*******..888888446666*********************98744 PP

                          EE..EEEE CS
                   B3  89 efelvvkv 96 
                              +v +
  Manes.13G130900.2.p 304 VL--NVYI 309
                          44..5555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086314.395181IPR003340B3 DNA binding domain
SMARTSM010195.8E-7181IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.5E-21381IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-20488IPR015300DNA-binding pseudobarrel domain
PfamPF023622.8E-14579IPR003340B3 DNA binding domain
CDDcd100172.95E-16579No hitNo description
Gene3DG3DSA:2.40.330.105.5E-17215311IPR015300DNA-binding pseudobarrel domain
PfamPF023627.5E-10219310IPR003340B3 DNA binding domain
SuperFamilySSF1019367.46E-17219311IPR015300DNA-binding pseudobarrel domain
SMARTSM010199.9E-12219313IPR003340B3 DNA binding domain
PROSITE profilePS5086311.632219313IPR003340B3 DNA binding domain
CDDcd100171.96E-14219311No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MNQEIPKKFI RKHGKDLPSP VILKVANGSI WKIELSKCHG EVWLEKGWQE FAKHHSLDHG  60
YFLVFKYEGH GHFCVFILDK SASEIQYPCE GICTADQKPE PVVENNEDGF SVEIMDDPSQ  120
GRKAGEMSPL SPHQQSCKRT RTDPTAKTLD SMFCSSTEYL SNKATPSTCI KVESSICSKG  180
FGGMLKQLTG SKKDACRKRT RSDSKALANA NKFVSSNPFF KSVVWLDKRK NSIVCVPVSF  240
SRRNIKDCVA NLTLQFGDRL WPVKLIRYSK WNVVRFCSGW SVFARENSLE MGDVCIFELI  300
KIDVLNVYIF KCDK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.13G130900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021631899.10.0putative B3 domain-containing protein Os03g0621600
TrEMBLA0A2C9URL10.0A0A2C9URL1_MANES; Uncharacterized protein
STRINGcassava4.1_012186m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-34B3 family protein