PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.13G093300.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ERF
Protein Properties Length: 359aa    MW: 39861.4 Da    PI: 6.288
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.13G093300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.16.9e-21155205256
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                           y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+ge
  Manes.13G093300.1.p 155 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDKAAYKLRGE 205
                          59******9.**********955...5**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.04E-34154214No hitNo description
Gene3DG3DSA:3.30.730.102.7E-32155213IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-23155213IPR016177DNA-binding domain
PROSITE profilePS5103223.261155212IPR001471AP2/ERF domain
SMARTSM003801.1E-37155218IPR001471AP2/ERF domain
PRINTSPR003673.5E-11156167IPR001471AP2/ERF domain
PfamPF008471.2E-14156205IPR001471AP2/ERF domain
PRINTSPR003673.5E-11178194IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MAAATDFYSS STTPGFSIID PCREELMKAL EPFMKTISLS PSASPSSPYD SPISFQPNLC  60
SDFCSPSSTH MVSQEFCKNN HMGLEPRGSI GLNHLTPSQI LQIQAQIHLQ QQQQQQQIAN  120
LTSTSHLLYN QRPSYLSPKP VLMKQSASTP KPTKLYRGVR QRHWGKWVAE IRLPRNRTRL  180
WLGTFDTAEE AALAYDKAAY KLRGEFARLN FPHLHHQGAH VCGEFGDYKP LHSSVDAKLQ  240
AICESLANSQ KQGKTGERIY ADDSKTILSA SSQAKKEDDY SMKGELKREF DTYGVEDSKV  300
EISSASPAPA SSDESSAGSS SPQSEISFWD FSDSSQWDET ENFSLEKYPS AEIDWAAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-21154212160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.13G093300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021633104.10.0ethylene-responsive transcription factor RAP2-4-like
SwissprotQ8H1E41e-85RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A2C9UQC70.0A0A2C9UQC7_MANES; Uncharacterized protein
STRINGcassava4.1_010526m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105732109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.12e-54related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]