PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.13G065500.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C3H
Protein Properties Length: 456aa    MW: 49461.2 Da    PI: 8.0453
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.13G065500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH375.7e-125581127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                         ++++ C +++rtG C yG++C+F+H+p
  Manes.13G065500.1.p 55 PGEPDCIYYLRTGLCGYGSNCRFNHPP 81
                         5789*********************97 PP

2zf-CCCH36.48.7e-1298122327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          ++ C ++++tGtCkyG++Ck++H++
  Manes.13G065500.1.p  98 QPDCGYYLKTGTCKYGSTCKYHHPR 122
                          789********************96 PP

3zf-CCCH38.32.3e-12144167427
                          ---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                          + C++++rtG Ck+G  CkF+H++
  Manes.13G065500.1.p 144 KSCPYYMRTGSCKFGVACKFHHPQ 167
                          66********************97 PP

4zf-CCCH39.59.5e-13292317227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++Cr+++ tGtCkyG+ Ck++H++
  Manes.13G065500.1.p 292 DQPECRYYMNTGTCKYGSDCKYHHPK 317
                          689*********************96 PP

5zf-CCCH322.1e-10339363327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          ++ C++++ +G Ck+G++C+F H++
  Manes.13G065500.1.p 339 QPVCSNYSMYGLCKFGPTCRFDHPF 363
                          689********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.2955482IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-65481IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-95681IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-65982IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-56080IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.64395123IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-595122IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-998122IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-699123IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-4101122IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-6139168IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.352140168IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-5142167IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-10143167IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-5145166IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.549290318IPR000571Zinc finger, CCCH-type
SMARTSM003568.1E-6290317IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-10292317IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-7293319IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.7E-6296317IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.277336364IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-5336363IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-6336362IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-7339363IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MPDNSNNNNN NRQVKSNAVP NQSPDNIEDG IWRLKIHDNQ EQGGMAPSSP YPDRPGEPDC  60
IYYLRTGLCG YGSNCRFNHP PAALGTQFIE ELPERVGQPD CGYYLKTGTC KYGSTCKYHH  120
PRDRNGAGPV SFNILGLPMR QDEKSCPYYM RTGSCKFGVA CKFHHPQPAP LGTGLPLTGP  180
AVSGPMGTSI MPSSGLPYLG GLPAWSLPRT PYVSGPRPQG PQAYMPVVLS PSQGVIPAQG  240
WNTYVGNLNP MSSASVLGSS LVYNSRNQGE SGSSGQVLLL STTTSNLPER PDQPECRYYM  300
NTGTCKYGSD CKYHHPKERI AQLATSSVGS PGLPSRPAQP VCSNYSMYGL CKFGPTCRFD  360
HPFPGYPYSY SLNLQPVSIF DSSLFTYPRM SPPALSSESP VSLSPKFPDW VRNPDTASNK  420
HQNSDKNTKI SDDHPEQAGS PPLRSSHSSS EPSHD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002528968.10.0PREDICTED: zinc finger CCCH domain-containing protein 3 isoform X1
TrEMBLB9SSJ90.0B9SSJ9_RICCO; Zinc finger protein, putative
STRINGPOPTR_0014s15770.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80303346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-124C3H family protein