PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.12G126800.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MIKC_MADS
Protein Properties Length: 228aa    MW: 25957.4 Da    PI: 6.5329
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.12G126800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.54.2e-29959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         k+i+n + rqvtfskRr g++KKAeELSvLCda+va+iifsstgkl+ey+s
  Manes.12G126800.1.p  9 KKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEYCS 59
                         68***********************************************96 PP

2K-box47.67.2e-179517322100
                K-box  22 akLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                          ++L ke+ +  +++R++ Ge+L+ L++++LqqLe+ Le +l+++ +kK e ++++i+elq k ++l een++Lr++++e
  Manes.12G126800.1.p  95 SRLSKEVAEKSHQLRQMRGEELQGLNIEQLQQLEKSLEVGLSRVIEKKGEKIMNEISELQTKGRKLMEENERLRQEVME 173
                          6788888888899***************************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.375161IPR002100Transcription factor, MADS-box
CDDcd002653.43E-40277No hitNo description
PRINTSPR004049.7E-28323IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.53E-32379IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003195.4E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004049.7E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004049.7E-283859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.66487177IPR002487Transcription factor, K-box
PfamPF014864.5E-1593171IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009266Biological Processresponse to temperature stimulus
GO:0009910Biological Processnegative regulation of flower development
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0030154Biological Processcell differentiation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048438Biological Processfloral whorl development
GO:0005634Cellular Componentnucleus
GO:0000900Molecular Functiontranslation repressor activity, nucleic acid binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MAREKIQIKK IDNATARQVT FSKRRRGLFK KAEELSVLCD ADVALIIFSS TGKLFEYCSS  60
SMKEILERHN LHSKNLEKLE QPSLELQLVE NSNRSRLSKE VAEKSHQLRQ MRGEELQGLN  120
IEQLQQLEKS LEVGLSRVIE KKGEKIMNEI SELQTKGRKL MEENERLRQE VMEISNCRKQ  180
TIADSENVVY EEGQSSESVT NVCNSNGPPH DYESSDTSLK LGLPYNG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P6e-20173173Myocyte-specific enhancer factor 2B
1tqe_Q6e-20173173Myocyte-specific enhancer factor 2B
1tqe_R6e-20173173Myocyte-specific enhancer factor 2B
1tqe_S6e-20173173Myocyte-specific enhancer factor 2B
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00272DAPTransfer from AT2G22540Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012081656.11e-144PREDICTED: MADS-box protein SVP
RefseqXP_012081657.11e-144PREDICTED: MADS-box protein SVP
SwissprotQ9FVC11e-124SVP_ARATH; MADS-box protein SVP
TrEMBLA0A067KD681e-143A0A067KD68_JATCU; Uncharacterized protein
STRINGVIT_00s0313g00070.t011e-139(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89033106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-125MIKC_MADS family protein