PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.12G110600.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family LBD
Protein Properties Length: 248aa    MW: 27106.9 Da    PI: 8.3323
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.12G110600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260100.41.7e-312103197
               DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                          +C++C+vlr++C++ C+l+p++     p++q +++ +v+k+FG++ ++++++a+pe++r+++++sl++eA+ r+ +Pv+Gavg+++++++
  Manes.12G110600.1.p   2 SCNGCRVLRKGCSETCILRPCLqwietPEAQGHATVFVAKFFGRAGLMSFISAVPESQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNW 91 
                          6***************************************************************************************** PP

               DUF260  86 qleqlkaelall 97 
                          +++q+++e++l+
  Manes.12G110600.1.p  92 HVCQAAVETVLR 103
                          ******998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.8821107IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-262101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSETCILR PCLQWIETPE AQGHATVFVA KFFGRAGLMS FISAVPESQR  60
PALFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGTLRPM PELLTAGGSP  120
SLASDEVSEA EVACTDMWKL QDPNPNPHSR FSNSRSRTSP KRKRTDEPVN IIKQEKLQLQ  180
FPPSDLDLRL TPIFSPKSSP RKPEIRRPGT PSMNSEESVT TTTTCFESGL GDQYGNGGER  240
KLLNLFV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.12G110600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021629304.10.0LOB domain-containing protein 37-like isoform X1
SwissprotQ9FN115e-93LBD37_ARATH; LOB domain-containing protein 37
TrEMBLA0A2C9UVP80.0A0A2C9UVP8_MANES; Uncharacterized protein
STRINGcassava4.1_014772m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.12e-94LOB domain-containing protein 37
Publications ? help Back to Top
  1. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]