PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.12G093800.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family LBD
Protein Properties Length: 303aa    MW: 33889.1 Da    PI: 6.6941
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.12G093800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260133.11.1e-4171061100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          +CaaCk+lrrkC ++Cv+apyfp +qp+kf +vhk+FGasnv kll++l+ ++reda++sl+yeAe r+rdPvyG+vg+i+ lq++l+ql
  Manes.12G093800.1.p   7 PCAACKFLRRKCIQECVFAPYFPPDQPQKFSCVHKVFGASNVAKLLNELNASQREDAVNSLAYEAEERLRDPVYGCVGLISILQHRLKQL 96 
                          7***************************************************************************************** PP

               DUF260  91 kaelallkee 100
                          +++l  +k+e
  Manes.12G093800.1.p  97 QNDLYIAKRE 106
                          ***9988876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.376107IPR004883Lateral organ boundaries, LOB
PfamPF031952.2E-417103IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009954Biological Processproximal/distal pattern formation
GO:0009965Biological Processleaf morphogenesis
GO:0048441Biological Processpetal development
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MSSSNSPCAA CKFLRRKCIQ ECVFAPYFPP DQPQKFSCVH KVFGASNVAK LLNELNASQR  60
EDAVNSLAYE AEERLRDPVY GCVGLISILQ HRLKQLQNDL YIAKRELAGY IGPSAMLPIL  120
QNPTYMPQQH LGNPSSSNVI PYNMLPMMGI PTGPPHGGQL MIREHPQQHP THPQQQFFEA  180
QQLADAVVVR DQQEMFRTYD QQQPEDQSQH HQELVRYNSG FDAAGLVTAT GYNQLSVASA  240
MSPSLALGIY DNPYQIQQTA HPHHQLQEQL LLQPQQQQPP QLTQQQHQRS GNEEGRSVGP  300
SC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-4731107114LOB family transfactor Ramosa2.1
5ly0_B3e-4731107114LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtControls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269|PubMed:12787254, ECO:0000269|PubMed:15821980}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.12G093800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021629989.10.0LOB domain-containing protein 36-like
RefseqXP_021629990.10.0LOB domain-containing protein 36-like
SwissprotQ9FKZ32e-87LBD36_ARATH; LOB domain-containing protein 36
TrEMBLA0A2C9UW340.0A0A2C9UW34_MANES; Uncharacterized protein
STRINGcassava4.1_027088m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23533484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.13e-85ASYMMETRIC LEAVES 2-like 1
Publications ? help Back to Top
  1. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]
  2. Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A
    SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 92(6): p. 661-674
    [PMID:27605094]