PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.12G089200.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C3H
Protein Properties Length: 405aa    MW: 45106.6 Da    PI: 7.9704
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.12G089200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.31.3e-08149169526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                           C+ f+r G C++Gd+C FaHg
  Manes.12G089200.1.p 149 VCSEFRR-GGCSRGDSCEFAHG 169
                          7******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.5E-5144170IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-6145171IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.483145171IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-6149169IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.456179203IPR000571Zinc finger, CCCH-type
SMARTSM003561.9179202IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MSTICADQHK LYPSHQLFSS SSSSSSSYYK KPFKDLEIPP RKLLLTKKAF QDSPDNIMSP  60
YYEPNLHNFL HYNDPIDCDH GHVHDHHSRG KVADEDMDPY SSDNFRMYEF KIRRCTRCRS  120
HDWTDCPFAH PGEKARRRDP RKYHYSGTVC SEFRRGGCSR GDSCEFAHGV FECWLHPSRY  180
RTEACKDGKN CKRKICFFAH SPRQLRILPE ASCVGGKYDE SLVTCSLNHG HCCCLACHSV  240
ISSPTSTLLG ISQMSPPVSP SLSPPLSPMK QRSISGLSQN SRFGDRLSNL RSGIVSYKDV  300
LAELMTSLDA MNLNNDAAAA ASSLISFSAA NNRNMNIPCI GEDHHQQLIL SPSTTEPRGG  360
SRNSFNGNYS SKGSIDEKIK NDGKNGGPGP DPDLDLGWVN ELLM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012088238.11e-156PREDICTED: zinc finger CCCH domain-containing protein 2
RefseqXP_015573898.11e-156PREDICTED: zinc finger CCCH domain-containing protein 2
TrEMBLA0A067JJM31e-156A0A067JJM3_JATCU; Uncharacterized protein
STRINGPOPTR_0017s04510.11e-145(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62612644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.13e-78C3H family protein