PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.12G069000.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C3H
Protein Properties Length: 457aa    MW: 49509.8 Da    PI: 7.2321
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.12G069000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.92.6e-115581127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                         ++++ C +++rtG C yG++C+F+H+p
  Manes.12G069000.1.p 55 PGEPDCVYYLRTGLCGYGSNCRFNHPP 81
                         5789*********************97 PP

2zf-CCCH36.48.7e-1298122327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          ++ C ++++tGtCkyG++Ck++H++
  Manes.12G069000.1.p  98 QPDCGYYLKTGTCKYGSTCKYHHPR 122
                          789********************96 PP

3zf-CCCH36.21e-11144167427
                          ---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                          + C +++rtG Ck+G  CkF+H++
  Manes.12G069000.1.p 144 KSCAYYMRTGSCKFGVACKFHHPQ 167
                          56********************97 PP

4zf-CCCH39.59.2e-13292317227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++Cr+f+ tGtCkyG+ Ck++H++
  Manes.12G069000.1.p 292 DQPECRYFMNTGTCKYGSDCKYHHPK 317
                          689*********************96 PP

5zf-CCCH33.47.4e-11337363127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          +++++C++++ +G Ck+G++C+F H++
  Manes.12G069000.1.p 337 PGQPICSNYSMYGLCKFGPTCRFDHPF 363
                          5789*********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.4085482IPR000571Zinc finger, CCCH-type
SMARTSM003567.5E-75481IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-85681IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.55E-65981IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.8E-56079IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.64395123IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-595122IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-998122IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-699123IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-4101122IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-6139168IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.526140168IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-4142167IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-9143167IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4145166IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.558290318IPR000571Zinc finger, CCCH-type
SMARTSM003565.2E-6290317IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-10292317IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-7293319IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.6E-6296316IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-6335362IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-6336363IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.718336364IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-7338363IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MPDNSDNNNN NRQVKSNAVP NQSPDNIEDA IWRLKIHDNQ EQGVMAPSSP YPDRPGEPDC  60
VYYLRTGLCG YGSNCRFNHP PAAQGTQFRE ELPERVGQPD CGYYLKTGTC KYGSTCKYHH  120
PRDRNGAGPV SFNILGLPMR QDEKSCAYYM RTGSCKFGVA CKFHHPQPAP LGAGLPLTEP  180
ADSGPLGSST APSSGLPYVG GLSTWSLLRA PYASGPCLQG PQAYMPVVLS PSQGVFPAQG  240
WNTYVGNLSP MSSASVLGSN LAYNSRNQGE SGSSGQVQLL STTNTNLPER PDQPECRYFM  300
NTGTCKYGSD CKYHHPKDRI AQLGTNPVGP PGLPSRPGQP ICSNYSMYGL CKFGPTCRFD  360
HPFPGYPYSY SLSLQPLSIF DSSLLTYPRI SPPALSSENP VSLSSKFPDW VRNPDGASNK  420
KHQNSDTNTR ISDDQPEQAS SPPPHSSQDS SEPSHD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002528968.10.0PREDICTED: zinc finger CCCH domain-containing protein 3 isoform X1
TrEMBLB9SSJ90.0B9SSJ9_RICCO; Zinc finger protein, putative
STRINGPOPTR_0002s21790.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80303346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-123C3H family protein