PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.11G052900.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C3H
Protein Properties Length: 264aa    MW: 29194.6 Da    PI: 9.3277
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.11G052900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.4e-085175126
                         --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                         +kt lC  f+  G+C+yG +C+FaHg
  Manes.11G052900.1.p 51 FKTQLCAKFRL-GYCSYGYKCSFAHG 75
                         69*********.*************8 PP

2zf-CCCH22.22.4e-07100117826
                          GGGGTS--TTTTT-SS-SS CS
              zf-CCCH   8 ffartGtCkyGdrCkFaHg 26 
                          f++r  +C yGdrC+F H+
  Manes.11G052900.1.p 100 FYSR-NECTYGDRCRFLHV 117
                          6666.9************6 PP

3zf-CCCH37.34.6e-12158183227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          k ++C+ + rtG C+yG +C+FaHg+
  Manes.11G052900.1.p 158 KKRICNKWERTGSCPYGKTCCFAHGQ 183
                          889*********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.5E-65076IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.3665077IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-75080IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-135081IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-65175IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.13E-689119IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.23992119IPR000571Zinc finger, CCCH-type
SMARTSM003560.02492118IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-794116IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-596117IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.033156184IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-9156187IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-5157183IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-13157188IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-9158183IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MHHLRPRFPT ENKEYENLSQ DPMCNIPGTC EIAAPNPKMP VATSNAVTGS FKTQLCAKFR  60
LGYCSYGYKC SFAHGIGELR KRLVNVQGPV VNQSNICRMF YSRNECTYGD RCRFLHVSPD  120
NIKRDMGYCR ESSSLRIGTT GFSGGQRSGF ASSKLAMKKR ICNKWERTGS CPYGKTCCFA  180
HGQAELEKPI GDVELASGLA PTNTSKALPI SKSVVGTSYQ LQVQGMKCTF KKRAIQKISG  240
IYADWIEDMP LLHNSLNIAE KCS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012073226.11e-83PREDICTED: zinc finger CCCH domain-containing protein 39-like
TrEMBLA0A067KLK01e-89A0A067KLK0_JATCU; Uncharacterized protein
STRINGPOPTR_0003s06010.18e-81(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1880666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.13e-36C3H family protein