PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.10G141400.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family NF-YA
Protein Properties Length: 238aa    MW: 25839 Da    PI: 9.7661
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.10G141400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA101.95.9e-3266122158
            CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                          +ep+YVNaKQ+++Il+RRq+Rak+e ekk  +k rkpylheSRh+hA+rR+Rg+gGrF
  Manes.10G141400.2.p  66 EEPVYVNAKQFHGILRRRQARAKAELEKKA-IKVRKPYLHESRHQHAMRRARGCGGRF 122
                          69***************************9.**************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005214.3E-3664125IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.45365125IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.0E-2867122IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.3E-246890IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS0068607090IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.3E-2499122IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MAAPVAMGGH VDPNSQMELV GHSIVLTSYP YSDQQYGGMI TYAPQPMVPP QFLHHARMPL  60
PLEMEEEPVY VNAKQFHGIL RRRQARAKAE LEKKAIKVRK PYLHESRHQH AMRRARGCGG  120
RFLSTKKCEN NSTNPTADKD VNSGANPSRQ SAIFSGSEFL SKHSSGDLNS SNGQLEGKGS  180
VGQDMQAHLS TNGNGNSHGL LSMYHPSSGD MLTGGFLGQH RESTHRNGVT NGALPIN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A8e-2166130266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.10G141400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021626256.11e-177nuclear transcription factor Y subunit A-1-like isoform X2
SwissprotQ945M98e-39NFYA9_ARATH; Nuclear transcription factor Y subunit A-9
TrEMBLA0A2C9V6501e-176A0A2C9V650_MANES; Uncharacterized protein
TrEMBLA0A2C9V6701e-176A0A2C9V670_MANES; Uncharacterized protein
STRINGcassava4.1_011264m1e-176(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.34e-34nuclear factor Y, subunit A1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]