PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.10G124800.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family B3
Protein Properties Length: 104aa    MW: 11726.5 Da    PI: 8.2368
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.10G124800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.59.8e-13499193
                         EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS. CS
                   B3  1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr. 87
                         f k+l   +v  ++ l +p + +++     +++ + +++ + d +g++W++ +  + + ++ v+++GW eF+   +L +g +++F+ + ++ 
  Manes.10G124800.1.p  4 FSKIL--TSVDIHRGLEIPHDRCDDVlveLLITGQRMKILVADVEGNTWNFVCFTKSGNKQPVFKNGWLEFAGHRNLAAGTTITFYKEiDQa 93
                         55666..445555569*******9999997778899*****************65666666************************9332333 PP

                         SEE..E CS
                   B3 88 sefelv 93
                         ++++++
  Manes.10G124800.1.p 94 TGAQYK 99
                         555555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.7E-11391IPR015300DNA-binding pseudobarrel domain
CDDcd100174.28E-113103No hitNo description
SuperFamilySSF1019361.24E-11388IPR015300DNA-binding pseudobarrel domain
PfamPF023623.9E-10498IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
MEIFSKILTS VDIHRGLEIP HDRCDDVLVE LLITGQRMKI LVADVEGNTW NFVCFTKSGN  60
KQPVFKNGWL EFAGHRNLAA GTTITFYKEI DQATGAQYKI RVR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.10G124800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021625663.12e-62uncharacterized protein LOC110624707
TrEMBLA0A2C9V6X11e-71A0A2C9V6X1_MANES; Uncharacterized protein
STRINGcassava4.1_028150m2e-72(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.13e-08ARF family protein