PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.10G122700.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family B3
Protein Properties Length: 115aa    MW: 13585 Da    PI: 10.7147
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.10G122700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.31.7e-10491189
                         EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3  1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldg 86
                         f+k+l  s++  ++rl +p +f++ +    +g++    +l+++  +++++ ++++ rk + +   vltkGW eFv+  +Lk+gD +v++ + 
  Manes.10G122700.1.p  4 FKKEL--SSTDINKRLAVPTRFFQLIrprfKGNHFL--DLKVKY-KNQKMGLRCCRRKEGTHpkPVLTKGWVEFVRREKLKAGDRIVLEEE- 89
                         56666..66666678********8778877555433..444433.56888999965555555889************************33. PP

                         SSE CS
                   B3 87 rse 89
                          +e
  Manes.10G122700.1.p 90 -DE 91
                         .33 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.0E-13391IPR015300DNA-binding pseudobarrel domain
CDDcd100171.35E-93102No hitNo description
SuperFamilySSF1019366.28E-11393IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.00354106IPR003340B3 DNA binding domain
PfamPF023621.9E-7492IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    Send to blast
MEYFKKELSS TDINKRLAVP TRFFQLIRPR FKGNHFLDLK VKYKNQKMGL RCCRRKEGTH  60
PKPVLTKGWV EFVRREKLKA GDRIVLEEED EATAGVEFRI EVQKKPFRLF GKDI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.10G122700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2C9V6X42e-77A0A2C9V6X4_MANES; Uncharacterized protein
STRINGcassava4.1_027733m3e-78(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12594414