PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.10G121400.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family B3
Protein Properties Length: 94aa    MW: 10581.1 Da    PI: 8.0594
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.10G121400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.92.7e-11589293
                         EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE. CS
                   B3  2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefe 91
                          k+l   +v  ++ l +p + +++        +++ + d +g++W++ ++ + + ++ v+++GW eF+   +L +g +++F+ d ++ ++++
  Manes.10G121400.1.p  5 SKIL--TSVDINKGLEIPHDRCDDR-------MKILVADVEGNTWNFVCCTKSGNKQPVFKNGWLEFAGHWNLAAGTTITFYKDiDQaTGAQ 87
                         5555..3344444588888888333.......579**************88777788*************************4433335555 PP

                         .E CS
                   B3 92 lv 93
                         ++
  Manes.10G121400.1.p 88 YK 89
                         55 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-9381IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.29E-11379IPR015300DNA-binding pseudobarrel domain
CDDcd100175.40E-12393No hitNo description
PfamPF023622.2E-81788IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MEIFSKILTS VDINKGLEIP HDRCDDRMKI LVADVEGNTW NFVCCTKSGN KQPVFKNGWL  60
EFAGHWNLAA GTTITFYKDI DQATGAQYKI RVR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.10G121400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021625663.12e-53uncharacterized protein LOC110624707
TrEMBLA0A2C9V6U25e-64A0A2C9V6U2_MANES; Uncharacterized protein
STRINGcassava4.1_028150m2e-57(Manihot esculenta)