PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.10G063900.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C3H
Protein Properties Length: 724aa    MW: 80343 Da    PI: 5.0362
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.10G063900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.24.6e-06120141527
                          --SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                          +C ff++ G C  GdrC F Hgp
  Manes.10G063900.1.p 120 PCFFFQK-GLCIKGDRCAFLHGP 141
                          6777777.*************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.8032453IPR000571Zinc finger, CCCH-type
PfamPF156632.1E-112579No hitNo description
SMARTSM003560.00182552IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.5125581IPR000571Zinc finger, CCCH-type
SMARTSM003560.0525780IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.558115142IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-5115141IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5116140IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4119141IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 724 aa     Download sequence    Send to blast
MIAARQQQQD KTTAMAPSAE EEALKRNTDC VYFLASPLTC KKGSECEYRH SEYARVNPRD  60
CYYWLNGNCL NPKCGFRHPP LDGLFGSQAS DSGAASLPPS LMAVAPAMNS QQSSAKQAVP  120
CFFFQKGLCI KGDRCAFLHG PNPTSNKVSQ PTVPSINELS PQKKASVGSQ RLTQDHKISL  180
ANFSKVAGAA AEAKPVPKPE IGSLINAAGV ERNLPPSKSM DAELSKYKAT NLPPVNGNLS  240
RFNRLHQSQD DHVLQNGKDG DEILRESSPG FDVLVDDELR NSDYYHSEDQ YGRARGHEGR  300
SMNPVDEYDM GHTADYSSVA EFDRETYSSL RDYDTYDHMQ GQYAWEQHRP SSETVLERPA  360
HLEQRAYSKP DSPEPIDGSD LRYRLSKQRR VHGLRSVVSH DFVPENQVEE RGYRGSSRRD  420
AHNLPSHESS MSSLLRGRIK LPEQSPNGSN LHAEREIGRG RNWDRLSPGR SEIQSQQGRL  480
RDRIKARVEE HYNIEGRNLR GTRMRREMAN EGGIDFAGPK SLAELKGAKT TESRVQQSLG  540
KRKQLGDYQP SEGDLSFEGP MPLSEILKRK REAESAATGS GITSVSKNEN DQKECKESLL  600
GESNNAVVAE TQGDLSSMKD EASKQVHKDE GSTYAAAGVG TVGESVGQYS SQQPKPSETG  660
MIVDDGMEDH EYEADDQREG DYEYEQVDEG EYYEEGENAD AEEEYEDDED GDDFAKKIGV  720
MLS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1496505RNLRGTRMRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012089583.10.0PREDICTED: zinc finger CCCH domain-containing protein 17
TrEMBLA0A067JSN90.0A0A067JSN9_JATCU; Uncharacterized protein
STRINGPOPTR_0010s10850.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF92273137