PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.10G011700.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C3H
Protein Properties Length: 668aa    MW: 72539.4 Da    PI: 6.6553
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.10G011700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.11.3e-07266286526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          +C+ f++ G C+ Gd+C +aHg
  Manes.10G011700.1.p 266 PCPEFRK-GACQKGDSCEYAHG 286
                          8******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484036.84E-1555151IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.9E-1576153IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.56576151IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.60376100IPR002110Ankyrin repeat
PfamPF127961.5E-976145IPR020683Ankyrin repeat-containing domain
SMARTSM002484.8E-476106IPR002110Ankyrin repeat
CDDcd002042.58E-1378174No hitNo description
SMARTSM002480.0017111143IPR002110Ankyrin repeat
PROSITE profilePS5008810.927111146IPR002110Ankyrin repeat
SMARTSM003562.8E-5261287IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.338261288IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-4266288IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-5266286IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.3E-4293325IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.15296320IPR000571Zinc finger, CCCH-type
SMARTSM0035625296319IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    Send to blast
MCSGSKGETF PANPTMEVES RISKDGILCK CSVLLELSAS DDLVGFKSEI EEKGLDVDEA  60
SYWYGRRIAS KKMGLEERTP LMIAAMFGST NVLKYIIDTG KVDVNRACGW DKVTALHCAV  120
AGGSSSLVEV VKLLLDASAD VNCFDANGNK PKDLLNPSLK SPCNSRRKLV ELLLKGESPS  180
EDEEEKLIMM SLPAKEGAEK KEYPIDVSLP DINNGIYGTD EFRMYCFKVK PCSRAYSHDW  240
TECPFVHPGE NARRRDPKKY PYSCVPCPEF RKGACQKGDS CEYAHGVFES WLHPAQYRTR  300
LCKDETGCSR KVCFFAHKPE ELRPVYASTG SAMPSPKSIS VSSMDMATLT PLSLGSPSLT  360
LPAVSTPPMS PLTAASSSPK SGGLWQNKVN LTPPALQLPG SRLKTALCAR DLDLEMKLLG  420
LENHINQLQQ QQLMDDLSGL SSPSCWSKDF NGIGDLKPTN LDDVFGSLDL SLLSPLQGMS  480
LNPSTPTQLQ SPTGLQIRQN MNQLRSSYPA NLSSTSLRKP ASHGFDSSAA VAAAVMNSRS  540
SAFAKRSHSF IDRGAATNRF GITAAANSVS MMSSNLSDWS SPDGKLDWGV QGDELNKLRK  600
SASFGFRSTN STTAANLTLS KVDEPDVSWV NSLVKDVPTA GFGVKGVHES VPPWMEQLYI  660
EQEQMVA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012087294.10.0PREDICTED: zinc finger CCCH domain-containing protein 29
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A067LJF00.0A0A067LJF0_JATCU; Uncharacterized protein
STRINGPOPTR_0008s06940.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein