PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.08G048800.4.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C3H
Protein Properties Length: 730aa    MW: 79291.9 Da    PI: 6.3511
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.08G048800.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.4e-07306326526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          +C++f++ G C++Gd C +aHg
  Manes.08G048800.4.p 306 PCPDFRK-GACRRGDMCEYAHG 326
                          8******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.31E-1640167IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.33587180IPR020683Ankyrin repeat-containing domain
SMARTSM002480.006687117IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.201.4E-1787167IPR020683Ankyrin repeat-containing domain
PfamPF127963.7E-1087156IPR020683Ankyrin repeat-containing domain
CDDcd002042.50E-1489165No hitNo description
SMARTSM002483.9E-4122154IPR002110Ankyrin repeat
PROSITE profilePS5008811.274122157IPR002110Ankyrin repeat
SMARTSM003564.0E-6301327IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582306328IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-4306328IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-5306326IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-4334364IPR000571Zinc finger, CCCH-type
SMARTSM0035649336359IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 730 aa     Download sequence    Send to blast
MCCGWERLKS TPSPTPPLIS FEESRPTNID MNHLTVETED AFASLLELAA NNDSEGFKRS  60
IECDPLSVDE TGLWYSRQKG FKQMVNQYRT PLMVAATYGS VDVMRLILSL SDADVNRSCG  120
SDKSTALHCA ASGGAPNALD AVKLLLAAGA DPNLVDANGH RPVDVIVVPP KLQGVKLTLK  180
ELLATDGSVI EHNLRVSTDN SNSNSPPLSP SMDNGSPLSA SDSPVRSKLN DTPVFSTSEK  240
KEYPVDPSLP DIKNSIYSTD EFRMYSFKVR PCSRAYSHDW TECPFVHPGE NARRRDPRKF  300
HYSCVPCPDF RKGACRRGDM CEYAHGVFEC WLHPAQYRTR LCKDGTSCAR RVCFFAHTVE  360
ELRPLYVSTG SAVPSPRSST PGATAMDFAA AMNLLPGSPS SVSVMSPSPF TPPMSPSTNG  420
MSHSSAAWPQ PNVPALHLPG SNLQSSRLRS ALNARDLPAE DYSLLPDFDV QQQQLLNELS  480
SLNQPSLSNN SLNRSGRLKI LTPSNLDDLF SAESSSPRYA DQALAAAVFS PTHKSAVLNQ  540
FQQQQSMLSP INTNFSPKNV DHPLLQASFA SGRMSPRNVE PISPMSSRVS MLAQREKQQQ  600
QLRSLSSRDL GSNSAAIAGS SVNSWSKWGS SNGKPDWAVA ADELGKLRRS NSFELGNGEE  660
PDLSWVQSLI KESPTEMKEK LAMPVSSSVA ATASSSEGPS MNPQIESVDH AVGAWIEQLQ  720
IDQLVAQQN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002526718.10.0PREDICTED: zinc finger CCCH domain-containing protein 30
RefseqXP_015579394.10.0PREDICTED: zinc finger CCCH domain-containing protein 30
RefseqXP_015579395.10.0PREDICTED: zinc finger CCCH domain-containing protein 30
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLB9SL490.0B9SL49_RICCO; Nucleic acid binding protein, putative
STRINGPOPTR_0016s05410.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain