PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.08G046400.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C3H
Protein Properties Length: 271aa    MW: 28186.1 Da    PI: 9.0239
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.08G046400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.71.5e-061134225
                         -S---SGGGGTS--TTTTT-SS-S CS
              zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                         k ++C  f+ t  C++G++C+F H
  Manes.08G046400.1.p 11 KSKPCTKFFSTAGCPFGESCHFLH 34
                         7789******************** PP

2zf-CCCH277.8e-0976101227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          k +lC+ +     Ck+Gd+C+FaHg+
  Manes.08G046400.1.p  76 KSRLCNKYNTAEGCKFGDKCHFAHGE 101
                          679*********************96 PP

3zf-CCCH27.74.7e-09237261126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          ykt+ C +f + G C +G rC+FaHg
  Manes.08G046400.1.p 237 YKTKMCENFTK-GSCTFGQRCHFAHG 261
                          9**********.*************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.709937IPR000571Zinc finger, CCCH-type
SMARTSM003560.91936IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-61035IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-41134IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-81134IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-1372104IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.98E-873105IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.11274102IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-676101IPR000571Zinc finger, CCCH-type
SMARTSM003560.01676101IPR000571Zinc finger, CCCH-type
SuperFamilySSF547918.62E-15133214IPR004088K Homology domain, type 1
SMARTSM003229.6E-12142212IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.107.0E-16142212IPR004088K Homology domain, type 1
PROSITE profilePS5008414.299143207IPR004088K Homology domain, type 1
PfamPF000131.3E-10145209IPR004088K Homology domain, type 1
CDDcd001051.16E-13145207No hitNo description
Gene3DG3DSA:4.10.1000.106.2E-16232267IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.26E-8235266IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.835236263IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-5236262IPR000571Zinc finger, CCCH-type
PfamPF006429.0E-6237261IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MDSLSTGVGS KSKPCTKFFS TAGCPFGESC HFLHYVPGGY NAVAQMMNLP PAVTPVSRNM  60
AAPPAIPNGS APSAVKSRLC NKYNTAEGCK FGDKCHFAHG EWELGKLIAP SHEDPRAIGT  120
VPGRMGGRME PPPPGPAASF GASATAKISV EASLAGAIIG KGGVHSKQIC RQTGAKLSIR  180
EHETDPNLRN IEFEGSFEQI KQASSMVSEL IASLSSANAP GKTIGAPAGH AHPGSNYKTK  240
MCENFTKGSC TFGQRCHFAH GAAELRKSGM *
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012087760.11e-179PREDICTED: zinc finger CCCH domain-containing protein 14
SwissprotQ7F8R01e-106C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A067JYK91e-179A0A067JYK9_JATCU; Uncharacterized protein
STRINGGLYMA19G32910.11e-152(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.12e-62C3H family protein