PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.08G029200.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family B3
Protein Properties Length: 327aa    MW: 37225 Da    PI: 8.6174
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.08G029200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B395.34.1e-30100202199
                          EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          f+k ltpsdv+k++rlv+pk++ae++    g+   +   l++ede g+ W+++++y+ +s++yvltkGW+++vk+++L++gD+v+F++++
  Manes.08G029200.1.p 100 FEKPLTPSDVGKLNRLVIPKQHAEKYfplsGNTVDKVLLLSFEDELGKWWRFRYSYWSSSQSYVLTKGWSRYVKEKRLDAGDIVLFERHR 189
                          99***************************84444456689***********************************************755 PP

                          SSEE..EEEEE-S CS
                   B3  87 rsefelvvkvfrk 99 
                           ++++l+++++r+
  Manes.08G029200.1.p 190 LDSERLFIGWRRR 202
                          59999******97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.7E-3995206IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-2897201IPR015300DNA-binding pseudobarrel domain
CDDcd100171.39E-2199193No hitNo description
SMARTSM010198.5E-22100203IPR003340B3 DNA binding domain
PROSITE profilePS5086313.944100203IPR003340B3 DNA binding domain
PfamPF023622.1E-27100202IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MSINFSSNVP KSLWWPQKDH RQSTMEPNPN SPSSQPHEES PISNPTSTSW PSHLFPHTML  60
PPHNATLNFS LNHVDDEQQY PEQDSSNRQR YSRLDKEVMF EKPLTPSDVG KLNRLVIPKQ  120
HAEKYFPLSG NTVDKVLLLS FEDELGKWWR FRYSYWSSSQ SYVLTKGWSR YVKEKRLDAG  180
DIVLFERHRL DSERLFIGWR RRGNTSSGGL WNRSLYSSSS SSGYQPYQQG HGANVTAGVP  240
YQPECLHAGS GVQNTKRLRL FGVNLECQLD EPEPSTPDGS SLSSQGPTQQ QPYGFHSAHS  300
SSSNSSHSHM DITFSRDINQ MRNHRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A4e-47952023113B3 domain-containing transcription factor NGA1
5os9_B4e-47952023113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.08G029200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021619973.10.0B3 domain-containing protein At2g36080-like
SwissprotQ8GYJ24e-69Y2608_ARATH; B3 domain-containing protein At2g36080
TrEMBLA0A2C9VF810.0A0A2C9VF81_MANES; Uncharacterized protein
STRINGcassava4.1_021263m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57393452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.19e-61B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Tanaka M, et al.
    The Minimum Open Reading Frame, AUG-Stop, Induces Boron-Dependent Ribosome Stalling and mRNA Degradation.
    Plant Cell, 2016. 28(11): p. 2830-2849
    [PMID:27760805]