PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.07G132200.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family LBD
Protein Properties Length: 172aa    MW: 18984.7 Da    PI: 8.3654
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.07G132200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260130.29e-41111101100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          +CaaCk+l+r+C ++C++apyf +++pkkfa vhk+FGasnv+k+l+++pee+red+++sl+yeAear+rdPvyG++g i  lq+++ +l
  Manes.07G132200.1.p  11 SCAACKFLKRRCIPNCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMVEL 100
                          6***************************************************************************************** PP

               DUF260  91 kaelallkee 100
                          + +la ++++
  Manes.07G132200.1.p 101 QFDLAIARAR 110
                          ***9998875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.64310111IPR004883Lateral organ boundaries, LOB
PfamPF031954.8E-4011108IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MRSHEPRSSS SCAACKFLKR RCIPNCIFAP YFRSDEPKKF AKVHKVFGAS NVSKILTEVP  60
EEQREDTVNS LAYEAEARLR DPVYGCIGAI ALLQRKMVEL QFDLAIARAR LARYTANSSS  120
SAAILNDRSG LTTFSEFPAI CGGLIQSFGL SSSELNQDGL MNDLSQFPYI F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-4961146114LOB family transfactor Ramosa2.1
5ly0_B4e-4961146114LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.07G132200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1448261e-107EF144826.1 Populus trichocarpa clone WS01118_L02 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021618399.11e-124LOB domain-containing protein 21
SwissprotQ9SRL87e-67LBD21_ARATH; LOB domain-containing protein 21
TrEMBLA0A2C9VL131e-123A0A2C9VL13_MANES; Uncharacterized protein
STRINGcassava4.1_017642m1e-123(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59443353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11090.13e-69LOB domain-containing protein 21
Publications ? help Back to Top
  1. Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB
    Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing.
    Plant Physiol., 2007. 144(1): p. 32-42
    [PMID:17351049]