PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.07G130600.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C3H
Protein Properties Length: 674aa    MW: 73395.2 Da    PI: 7.0692
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.07G130600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.61.9e-07266286526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          +C+ f++ G C+ Gd C +aHg
  Manes.07G130600.1.p 266 PCPEFRK-GACQKGDACEYAHG 286
                          8******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.201.3E-1454179IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484034.66E-1373151IPR020683Ankyrin repeat-containing domain
SMARTSM002480.01276106IPR002110Ankyrin repeat
PROSITE profilePS5029714.71676151IPR020683Ankyrin repeat-containing domain
PfamPF136374.6E-977135No hitNo description
CDDcd002041.18E-1278174No hitNo description
SMARTSM002480.014111143IPR002110Ankyrin repeat
PROSITE profilePS5008810.526111146IPR002110Ankyrin repeat
PROSITE profilePS5010313.037261288IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-5261287IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-4266288IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-5266286IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-4293325IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.15296320IPR000571Zinc finger, CCCH-type
SMARTSM0035625296319IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 674 aa     Download sequence    Send to blast
MCSGSKSKPF PSNPTMEVES GSRKDGIFCK CSVLLELSAS DDLVGFKNEI EEKGLDVDEA  60
SYWYGRRIGS KKMGFEERTP IMIAAMFGST NVLKYIIETG KVEVNRACGR DKVTALHCAV  120
AGGSNSLVEI VKLLLDASAD ANCVDASGNK PSDLFTSSLK SPCNSRRKLV ELLLKGESLS  180
GDEEEKLILM SLPTKEGTEK KEYPIDVSLP DINNGIYGTD EFRMYCFKVK PCSRAYSHDW  240
TECPFVHPGE NARRRDPKKY PYSCVPCPEF RKGACQKGDA CEYAHGVFES WLHPAQYRTR  300
LCKDETGCSR KVCFFAHKPE ELRPVYASTG SAMPSPKSIS VSSMDMATMS PLSLGSSSLT  360
LPTVSTPPMS PLSAASSTPK SGGLWQNKVN LTPPALQLPG SRLKTALCAR DFDLEMELLG  420
LENHSSQLQQ QQLMDEISGL SSSSCWSKDF NRIGDLKPTN LDDVFGLLDP SLLSPLQGMS  480
LKPSTPTQLQ SPTGVQICQN MNQLRSSYPA NLSSTVRKPA SFGFDSSAAV AAAVMNSRSS  540
AFAKRSHSFI DRGAATNRLG ITAAANSVSM MSSNLSDWSS PDGKLDWGVQ GDELNKLRKS  600
ASFGFRSNNR TTAADLTLSN INEPDVSWVN SLVKDVPPAG FGADKQYNLS KGVREPLQPW  660
MEQLYIEQEQ MVA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012087294.10.0PREDICTED: zinc finger CCCH domain-containing protein 29
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A067LJF00.0A0A067LJF0_JATCU; Uncharacterized protein
STRINGPOPTR_0008s06940.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein