PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.07G118600.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family LBD
Protein Properties Length: 219aa    MW: 24132.1 Da    PI: 4.4506
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.07G118600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.42.8e-3971071100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                          +C aCk+lrrkC +dCv+apyf+ ++ + +fa+vhk+FGasnv+kll +lp ++r+da+ ++ yeA ar++dP+yG+v++i++lqqq+++
  Manes.07G118600.1.p   7 SCGACKFLRRKCMNDCVFAPYFCYDEaATHFAAVHKVFGASNVSKLLLHLPVQNRSDAAITISYEALARMQDPIYGCVAHIFALQQQIAS 96 
                          6***********************98689************************************************************* PP

               DUF260  90 lkaelallkee 100
                          l++e++ l+++
  Manes.07G118600.1.p  97 LQEEIDILEHQ 107
                          *****999987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.4796108IPR004883Lateral organ boundaries, LOB
PfamPF031955.5E-377104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MIGMGSSCGA CKFLRRKCMN DCVFAPYFCY DEAATHFAAV HKVFGASNVS KLLLHLPVQN  60
RSDAAITISY EALARMQDPI YGCVAHIFAL QQQIASLQEE IDILEHQMAN FTVGIASCGS  120
SQTTSNPNCE MRISSLQDAI NMQYYQNQSA AQANNSGYVT GNQAFDSQMD AQLSLMHEWE  180
EPNPSCQSHP NPLDRLLEDL DQDIFPFCPW LDSGNTAN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A9e-3731147117LOB family transfactor Ramosa2.1
5ly0_B9e-3731147117LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.07G118600.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:17259263}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021618064.11e-164LOB domain-containing protein 33-like
SwissprotQ9LHS82e-56LBD33_ARATH; LOB domain-containing protein 33
TrEMBLA0A2C9VM861e-163A0A2C9VM86_MANES; Uncharacterized protein
STRINGcassava4.1_027608m1e-163(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91963242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.11e-58LOB domain-containing protein 33
Publications ? help Back to Top
  1. Bargmann BO,Birnbaum KD,Brenner ED
    An undergraduate study of two transcription factors that promote lateral root formation.
    Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45
    [PMID:24615800]