PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.07G115100.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family B3
Protein Properties Length: 300aa    MW: 34541.9 Da    PI: 10.2781
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.07G115100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.54.9e-1816971399
                         TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
                   B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99
                         +++ ++p+kf++++g++   s  + l+ ++gr+W+++l   k++g+++l++GW+eF +   L  g f+vF++++r   f  +v +f+k
  Manes.07G115100.1.p 16 NKIQSIPRKFVRKYGKD--LSNPVLLKVPDGRTWQMEL--IKSDGEVWLQNGWQEFLEYYSLAHGSFLVFEYNKRdCHF--NVIIFDK 97
                         45679*********977..7778***************..********************************9886777..9999987 PP

2B350.53.6e-16203297199
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrse 89 
                          ffk  ++s +l++ ++ +p++f+++++++ +++ +l++e+   r W vkl++  + ++  +l+ GW+ Fv++n L+ gD+++F+l++r++
  Manes.07G115100.1.p 203 FFKLIISSGHLTRPIVHVPRNFISNIKKS-TKKAKLQVEN---RWWIVKLTIYPHHNKgQFLS-GWSVFVRENSLRKGDVCIFELIDRET 287
                          89*********************777654.4555677666...89*****7744444324555.**********************9999 PP

                          E..EEEEE-S CS
                   B3  90 felvvkvfrk 99 
                          +  +v++fr+
  Manes.07G115100.1.p 288 ALVKVTIFRN 297
                          9899999986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010195.2E-10398IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-211598IPR015300DNA-binding pseudobarrel domain
PfamPF023621.6E-151797IPR003340B3 DNA binding domain
SuperFamilySSF1019368.24E-201898IPR015300DNA-binding pseudobarrel domain
CDDcd100171.65E-182096No hitNo description
PROSITE profilePS5086313.0842198IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.2E-15197297IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.65E-15201296IPR015300DNA-binding pseudobarrel domain
PfamPF023622.4E-13203297IPR003340B3 DNA binding domain
PROSITE profilePS5086312.957203298IPR003340B3 DNA binding domain
SMARTSM010192.0E-11203298IPR003340B3 DNA binding domain
CDDcd100178.36E-17203296No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
LVLQTVISKH PKRKINKIQS IPRKFVRKYG KDLSNPVLLK VPDGRTWQME LIKSDGEVWL  60
QNGWQEFLEY YSLAHGSFLV FEYNKRDCHF NVIIFDKTAS EIDYHVNVTN GEIKEPKMIE  120
ETETDASVEI SDHLMLSRKR KGKSPLPFSQ PQKKVKLETP TENTSLHCCG NPVQGNKNPL  180
AHEQSNHPAA IETSKNFTSL NPFFKLIISS GHLTRPIVHV PRNFISNIKK STKKAKLQVE  240
NRWWIVKLTI YPHHNKGQFL SGWSVFVREN SLRKGDVCIF ELIDRETALV KVTIFRNAK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.07G115100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021618013.10.0B3 domain-containing protein LOC_Os12g40080-like
TrEMBLA0A2C9VKN90.0A0A2C9VKN9_MANES; Uncharacterized protein (Fragment)
STRINGcassava4.1_030600m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-36B3 family protein