PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.07G115000.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family B3
Protein Properties Length: 402aa    MW: 45673.2 Da    PI: 8.8335
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.07G115000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.71.4e-152811310100
                          HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
                   B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                          ++ks +  +pk+fa+++gg    s  ++l+ + gr W+v++  +k +g++++++GW++F +   L  g f+vF++d++   f  +v++f+
  Manes.07G115000.2.p  28 YFKSFCQGVPKRFARKYGGF--LSNPVVLKVPGGRIWQVEV--TKFDGEVWFQNGWQGFLEYYSLVHGSFLVFEYDKSsCHF--NVTIFD 111
                          567777889********877..5667***************..********************************9964555..*****9 PP

                          SS CS
                   B3  99 ks 100
                          ks
  Manes.07G115000.2.p 112 KS 113
                          85 PP

2B365.11.1e-20238340199
                          EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-. CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkld. 85 
                          f+ v+ ps+v+    +++p +fa ++  +k+++  ++ l+ ++gr+W+vk+ ++k s++     +t+GW+ F+++n L++gD++ F+l+ 
  Manes.07G115000.2.p 238 FLIVMQPSYVHPGEKMSIPASFAMKYfPLKHTS--DVNLNGLDGRTWSVKFYFNKASNGqpmAKITRGWRVFAEDNCLEVGDVCAFELIm 325
                          778999********************7666544..8***************88888888787999**********************665 PP

                          .SSSEE..EEEEE-S CS
                   B3  86 .grsefelvvkvfrk 99 
                           +  +++++v++fr+
  Manes.07G115000.2.p 326 iQGAKATFKVTIFRN 340
                          355888899999986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.3E-223113IPR015300DNA-binding pseudobarrel domain
CDDcd100171.98E-197111No hitNo description
SuperFamilySSF1019361.02E-1927113IPR015300DNA-binding pseudobarrel domain
PfamPF023626.7E-1328112IPR003340B3 DNA binding domain
SMARTSM010194.5E-1028113IPR003340B3 DNA binding domain
PROSITE profilePS5086311.85736113IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.4E-25231341IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-23231340IPR015300DNA-binding pseudobarrel domain
CDDcd100174.64E-26236339No hitNo description
PfamPF023624.9E-20238340IPR003340B3 DNA binding domain
SMARTSM010191.1E-15238341IPR003340B3 DNA binding domain
PROSITE profilePS5086314.833238341IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MFAAERPHFF KIILEETIRD KKLMLFAYFK SFCQGVPKRF ARKYGGFLSN PVVLKVPGGR  60
IWQVEVTKFD GEVWFQNGWQ GFLEYYSLVH GSFLVFEYDK SSCHFNVTIF DKSASEIEYP  120
VSVTNGDDKE INDLQEEIQE PKIIEETEND SYVETLDDSV LGRKRKEKAL LSSLQPQKMM  180
KVENPTGNTS LHFPGKQVEG KKQTSDCIAV RKKPLTTQEK TKAVHRASVN FKSDNPFFLI  240
VMQPSYVHPG EKMSIPASFA MKYFPLKHTS DVNLNGLDGR TWSVKFYFNK ASNGQPMAKI  300
TRGWRVFAED NCLEVGDVCA FELIMIQGAK ATFKVTIFRN KKGDKMISKE EEESNSPGAI  360
AADKGFTSVH PFFKAVISSS YLDTMHVPQN FISNIKQSTE R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A3e-1520933921141B3 domain-containing transcription factor VRN1
4i1k_B3e-1520933921141B3 domain-containing transcription factor VRN1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162167RKRKEK
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.07G115000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021619043.10.0B3 domain-containing transcription factor VRN1-like isoform X2
TrEMBLA0A2C9VKH90.0A0A2C9VKH9_MANES; Uncharacterized protein
STRINGcassava4.1_023688m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.17e-38B3 family protein