PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.07G115000.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family B3
Protein Properties Length: 406aa    MW: 46133.8 Da    PI: 8.6396
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.07G115000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.61.4e-152811310100
                          HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
                   B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                          ++ks +  +pk+fa+++gg    s  ++l+ + gr W+v++  +k +g++++++GW++F +   L  g f+vF++d++   f  +v++f+
  Manes.07G115000.1.p  28 YFKSFCQGVPKRFARKYGGF--LSNPVVLKVPGGRIWQVEV--TKFDGEVWFQNGWQGFLEYYSLVHGSFLVFEYDKSsCHF--NVTIFD 111
                          567777889********877..5667***************..********************************9964555..*****9 PP

                          SS CS
                   B3  99 ks 100
                          ks
  Manes.07G115000.1.p 112 KS 113
                          85 PP

2B365.11.1e-20242344199
                          EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-. CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkld. 85 
                          f+ v+ ps+v+    +++p +fa ++  +k+++  ++ l+ ++gr+W+vk+ ++k s++     +t+GW+ F+++n L++gD++ F+l+ 
  Manes.07G115000.1.p 242 FLIVMQPSYVHPGEKMSIPASFAMKYfPLKHTS--DVNLNGLDGRTWSVKFYFNKASNGqpmAKITRGWRVFAEDNCLEVGDVCAFELIm 329
                          778999********************7666544..8***************88888888787999**********************665 PP

                          .SSSEE..EEEEE-S CS
                   B3  86 .grsefelvvkvfrk 99 
                           +  +++++v++fr+
  Manes.07G115000.1.p 330 iQGAKATFKVTIFRN 344
                          355888899999986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.4E-223113IPR015300DNA-binding pseudobarrel domain
CDDcd100172.68E-197111No hitNo description
SuperFamilySSF1019361.04E-1927113IPR015300DNA-binding pseudobarrel domain
PfamPF023626.8E-1328112IPR003340B3 DNA binding domain
SMARTSM010194.5E-1028113IPR003340B3 DNA binding domain
PROSITE profilePS5086311.85736113IPR003340B3 DNA binding domain
SuperFamilySSF1019364.51E-23235344IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.5E-25235345IPR015300DNA-binding pseudobarrel domain
CDDcd100176.12E-26240343No hitNo description
PROSITE profilePS5086314.833242345IPR003340B3 DNA binding domain
PfamPF023625.0E-20242344IPR003340B3 DNA binding domain
SMARTSM010191.1E-15242345IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MFAAERPHFF KIILEETIRD KKLMLFAYFK SFCQGVPKRF ARKYGGFLSN PVVLKVPGGR  60
IWQVEVTKFD GEVWFQNGWQ GFLEYYSLVH GSFLVFEYDK SSCHFNVTIF DKSASEIEYP  120
VSVTNGDDKE INDLQEEIQE PKIIEETEND SYVETLDDSV LGRKRKEKAL LSSLQPQKMM  180
KVENPTGNTS LHFPGKQVEV DFVGKKQTSD CIAVRKKPLT TQEKTKAVHR ASVNFKSDNP  240
FFLIVMQPSY VHPGEKMSIP ASFAMKYFPL KHTSDVNLNG LDGRTWSVKF YFNKASNGQP  300
MAKITRGWRV FAEDNCLEVG DVCAFELIMI QGAKATFKVT IFRNKKGDKM ISKEEEESNS  360
PGAIAADKGF TSVHPFFKAV ISSSYLDTMH VPQNFISNIK QSTER*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A3e-1521334321141B3 domain-containing transcription factor VRN1
4i1k_B3e-1521334321141B3 domain-containing transcription factor VRN1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162167RKRKEK
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.07G115000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021619041.10.0B3 domain-containing transcription factor VRN1-like isoform X1
TrEMBLA0A2C9VKM60.0A0A2C9VKM6_MANES; Uncharacterized protein
STRINGcassava4.1_023688m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.15e-37B3 family protein