PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.07G021500.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family B3
Protein Properties Length: 134aa    MW: 15783.2 Da    PI: 8.8163
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.07G021500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.42e-117105197
                          EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEE.TTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltled.esgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvF 82 
                          f k+lt  dv    r+v+p +  ++     +g+   s ++ + d  +  + +++++ r+k  +    v+ kGW +Fvk+++L +gD v+F
  Manes.07G021500.1.p   7 FRKKLTDTDVKY--RMVVPMDNYRDAfqipEGD--FSEEIDVIDmDDDSVKKFNCSKRRK--GhpkPVFCKGWISFVKEKHLVAGDEVTF 90 
                          778886666655..5899999998887666444..5667888884444666788844333..22469999******************** PP

                          EE-SSSEE..EEEEE CS
                   B3  83 kldgrsefelvvkvf 97 
                          + +++++++ ++kv 
  Manes.07G021500.1.p  91 YKEEDETGRIRIKVQ 105
                          *87779998888875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.1E-155102IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.65E-13698IPR015300DNA-binding pseudobarrel domain
CDDcd100175.02E-13697No hitNo description
PfamPF023622.4E-87105IPR003340B3 DNA binding domain
SMARTSM010190.00177106IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MKFEMLFRKK LTDTDVKYRM VVPMDNYRDA FQIPEGDFSE EIDVIDMDDD SVKKFNCSKR  60
RKGHPKPVFC KGWISFVKEK HLVAGDEVTF YKEEDETGRI RIKVQSQKIQ CLLFGVDLRD  120
AVRNATYFRQ QTK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.07G021500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021618783.18e-95AP2/ERF and B3 domain-containing transcription factor ARF14-like
TrEMBLA0A2C9VHS12e-93A0A2C9VHS1_MANES; Uncharacterized protein
STRINGcassava4.1_026201m3e-94(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-09related to ABI3/VP1 1