PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.07G011600.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MIKC_MADS
Protein Properties Length: 256aa    MW: 28917.9 Da    PI: 7.0899
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.07G011600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.34.1e-28959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         krien   rqvtfskRr+g+lKKA+EL +LCdaevaviifs+tgkl+e+s+
  Manes.07G011600.1.p  9 KRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFST 59
                         79***********************************************96 PP

2K-box652.7e-22791727100
                K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                          ++ e++ +++  +e++ Lk+ei +Lq +  +llG+dL+ LslkeLq+Leq+L+++l  +++kK++ll+eq+e+++ +e+++  en++Lr+
  Manes.07G011600.1.p  79 SKEESKAEKQELKEVDVLKEEIAKLQAKELQLLGQDLTGLSLKELQHLEQKLNEGLLCVKQKKEHLLMEQLEQSRLQEQKAMLENETLRR 168
                          33445555667789**************************************************************************** PP

                K-box  97 klee 100
                          ++ee
  Manes.07G011600.1.p 169 QVEE 172
                          *987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.6E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.043161IPR002100Transcription factor, MADS-box
CDDcd002658.98E-42272No hitNo description
SuperFamilySSF554551.44E-31276IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003197.0E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-293859IPR002100Transcription factor, MADS-box
PfamPF014863.5E-1681170IPR002487Transcription factor, K-box
PROSITE profilePS5129713.07386176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010047Biological Processfruit dehiscence
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0060862Biological Processnegative regulation of floral organ abscission
GO:0060867Biological Processfruit abscission
GO:0071365Biological Processcellular response to auxin stimulus
GO:2000692Biological Processnegative regulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MGRGKIEIKR IENANSRQVT FSKRRAGLLK KAQELAILCD AEVAVIIFSN TGKLFEFSTC  60
GMKRTLSRYN KCLESSEPSK EESKAEKQEL KEVDVLKEEI AKLQAKELQL LGQDLTGLSL  120
KELQHLEQKL NEGLLCVKQK KEHLLMEQLE QSRLQEQKAM LENETLRRQV EELRGFFPST  180
DHPVPTYLEY YSIDRKHSFT NNGSASLDTA CNCSMEKGDS DTTLHLGLPT DAYRKRKAPE  240
GESHSNDSGS QLVLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_S5e-21186183Myocyte-specific enhancer factor 2B
1tqe_R5e-21186183Myocyte-specific enhancer factor 2B
1tqe_Q5e-21186183Myocyte-specific enhancer factor 2B
1tqe_P5e-21186183Myocyte-specific enhancer factor 2B
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00508DAPTransfer from AT5G13790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012065634.11e-164PREDICTED: agamous-like MADS-box protein AGL15
SwissprotQ388471e-92AGL15_ARATH; Agamous-like MADS-box protein AGL15
TrEMBLA0A067L5A51e-164A0A067L5A5_JATCU; Uncharacterized protein
STRINGPOPTR_0009s06060.11e-119(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35823260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.18e-90AGAMOUS-like 15