PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.06G130900.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C3H
Protein Properties Length: 234aa    MW: 26624.7 Da    PI: 8.525
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.06G130900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.14.8e-06941091126
                          GTS--TTTTT-SS-SS CS
              zf-CCCH  11 rtGtCkyGdrCkFaHg 26 
                          r+G C++Gd C +aHg
  Manes.06G130900.1.p  94 RNGKCNRGDACEYAHG 109
                          78*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.8E-484110IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.16484111IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.4E-590112IPR000571Zinc finger, CCCH-type
SMARTSM0035619119142IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MLTGINTTNY NSFYDFGDYA FSGRNVHPSS QYDNIHDAIY GSDEFRMYAY KIKRCTRTRS  60
HDWTECPYAH RGEKATRRDP RKVPYVAIAC PGFRNGKCNR GDACEYAHGV FEYWLHPARY  120
RTRACNAGRY CQRKVCFFAH TPDQLRSEKK YACPFVYRAR MNGGDGGFGN GPGSEEGATS  180
SPVRIDGGSC FEGVSELLSS WRNLKIKDEE KKQKKADLEG DLPQLDWISE LVQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015582386.11e-128PREDICTED: zinc finger CCCH domain-containing protein 54 isoform X1
SwissprotO650362e-83C3H54_ARATH; Zinc finger CCCH domain-containing protein 54
TrEMBLA0A067JF501e-124A0A067JF50_JATCU; Uncharacterized protein
STRINGfgenesh2_kg.6__717__AT5G07500.14e-81(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF141721011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07500.19e-79C3H family protein