PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.06G125900.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 539aa    MW: 58837 Da    PI: 5.5088
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.06G125900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.91.4e-11356398754
                          HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                          ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A+eY+k+L
  Manes.06G125900.1.p 356 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 398
                          79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.58349398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-16352420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-14355404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-9355398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.56E-12356402No hitNo description
Gene3DG3DSA:4.10.280.101.0E-15356411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048731.28E-7467527No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MLSGLNGTVW MEDKEAQHST TDNNIHNSCD VIESKEDMGS LSTFKSMLEV EEEDWYIANS  60
SIHHHQDTIR DITFSPNLAE TDNLLLHPAD SSSSCSPASS VFNNIDPSQV PYFMHSKPTL  120
SSLLNAVSNN PLEHDIELGE IGFLDNQSTT TTTTNASPLL NRGGGVLSNY TDLSSNNLFS  180
SSNLSPDPPF STTRALQLPE NGPGFTGFNG FVESSGNRLF CNRSKLLRPL ETFPSMGAQP  240
TLFQKRAALK KNLTDNGSNL GVLSGIEIDK GKREITQLIE ENEKKSKLGK LDDTVEDVSI  300
DGSGLNYDSD EVTENIKMEE IGKNGGNSSN ANSSVTGGGV GDQKGKKKGL PAKNLMAERR  360
RRKKLNDRLY MLRSVVPKIS KMDRASILGD AIEYLKELLQ RINDLHNELE STPGSSLTPT  420
SFHPLTPTPS TLPTRIKDKL CPTSLPSPNA QPARVEVRVR EGRAVNIHMF CGRRPGLLLS  480
TMRALDNLGL DIQQAVISCF NGFAMDIFRA EQSKEGQDVQ PEQIKAVLLD SAGFHGMI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1345363KKKGLPAKNLMAERRRRKK
2357364ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001306859.10.0transcription factor ICE1-like
SwissprotQ9LSE21e-136ICE1_ARATH; Transcription factor ICE1
TrEMBLA0A0F6T6U70.0A0A0F6T6U7_JATCU; Inducer of CBF expression 1
STRINGPOPTR_0015s11650.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24143482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-107bHLH family protein