PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.06G068500.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family LBD
Protein Properties Length: 240aa    MW: 26173.7 Da    PI: 4.92
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.06G068500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26096.13.7e-302105199
               DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                          +C++C+vlr++C++dC+++p++     p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +PvyG+vg+++++++
  Manes.06G068500.1.p   2 SCNGCRVLRKGCSDDCTIRPCLqwiksPDSQANATLFLAKFYGRAGLINLIEAGPQHLRPAVFRSLLYEACGRIVNPVYGSVGLLWSGNW 91 
                          6***************************************************************************************** PP

               DUF260  86 qleqlkaelallke 99 
                            +q++++++l+++
  Manes.06G068500.1.p  92 VHCQAAVDAVLRGT 105
                          ******99988765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.0961107IPR004883Lateral organ boundaries, LOB
PfamPF031952.8E-242100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSDDCTIR PCLQWIKSPD SQANATLFLA KFYGRAGLIN LIEAGPQHLR  60
PAVFRSLLYE ACGRIVNPVY GSVGLLWSGN WVHCQAAVDA VLRGTPIMQM PSAPDAPPPN  120
LIDPLKTYDI RHVSKDHNSL ELNKVNNQTR FKSPVIKPSS PSDSMCRFNL GELSFEPLGE  180
PWLSQLTNGD SSRDDESMFS VETVEEDPGE PNYGLKSNSP SDDGDEIGLD LTLGLVPVK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.06G068500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021617086.11e-177LOB domain-containing protein 42-like
SwissprotQ9CA304e-77LBD42_ARATH; LOB domain-containing protein 42
TrEMBLA0A2C9VNP41e-176A0A2C9VNP4_MANES; Uncharacterized protein
STRINGcassava4.1_028798m1e-177(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68510.12e-79LOB domain-containing protein 42