PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.06G054900.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family NF-YA
Protein Properties Length: 209aa    MW: 22924.2 Da    PI: 8.7193
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.06G054900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA101.86.7e-32113169158
            CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                          +ep++VNaKQy++Il+RRq+Rak+e+e+k  +ksrkpylheSRh hAlrR+Rg gGrF
  Manes.06G054900.2.p 113 EEPVFVNAKQYHGILRRRQSRAKAESENKA-IKSRKPYLHESRHLHALRRARGLGGRF 169
                          69****************************.**************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.5E-35111172IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.376112172IPR001289Nuclear transcription factor Y subunit A
PfamPF020459.4E-27114169IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.5E-23115137IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860117137IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.5E-23146169IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MTSSVHDLSD NSETSEQQKH SEPQVHSSSP ATASMHPGMS NPNAQYATNL QLGSGHAMAA  60
AAYPYPDPYY RSIFAPYDAQ PYPPQPYGGQ PMVHLQLMGI QQAGVPLPSD AVEEPVFVNA  120
KQYHGILRRR QSRAKAESEN KAIKSRKPYL HESRHLHALR RARGLGGRFL NSKKDENQQE  180
NDSVGDKSQS NINLNSDKND IASSDSKS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-20112182171NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.06G054900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021616931.11e-152nuclear transcription factor Y subunit A-7-like isoform X2
RefseqXP_021616932.11e-152nuclear transcription factor Y subunit A-7-like isoform X2
RefseqXP_021616933.11e-152nuclear transcription factor Y subunit A-7-like isoform X2
SwissprotQ84JP18e-71NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBLA0A2C9VPP41e-151A0A2C9VPP4_MANES; Uncharacterized protein
STRINGcassava4.1_016099m1e-144(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.21e-43nuclear factor Y, subunit A7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]