PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.06G003200.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family NF-X1
Protein Properties Length: 1717aa    MW: 188196 Da    PI: 8.1691
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.06G003200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X116.32.2e-05226243118
             zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                          CG+H C+ +CH+GpC+ C
  Manes.06G003200.1.p 226 CGNHECSNTCHPGPCGDC 243
                          ****************99 PP

2zf-NF-X118.73.7e-06380398119
             zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                          CG+H+C++lCH+G CppC 
  Manes.06G003200.1.p 380 CGQHSCESLCHTGHCPPCL 398
                          ******************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd060081.01E-784145No hitNo description
SMARTSM004380.023107125IPR000967Zinc finger, NF-X1-type
PfamPF0142213109124IPR000967Zinc finger, NF-X1-type
CDDcd060083.69E-12152200No hitNo description
SMARTSM004380.0015162181IPR000967Zinc finger, NF-X1-type
PfamPF014220.026164179IPR000967Zinc finger, NF-X1-type
CDDcd060082.69E-11216259No hitNo description
PfamPF014227.9E-4226243IPR000967Zinc finger, NF-X1-type
SMARTSM004384.2E-4226245IPR000967Zinc finger, NF-X1-type
CDDcd060081.74E-16274320No hitNo description
PfamPF014220.011278301IPR000967Zinc finger, NF-X1-type
SMARTSM004381.8E-4284303IPR000967Zinc finger, NF-X1-type
CDDcd060085.63E-6332391No hitNo description
PfamPF0142229342353IPR000967Zinc finger, NF-X1-type
SMARTSM00438260342376IPR000967Zinc finger, NF-X1-type
CDDcd060081.84E-10370413No hitNo description
PfamPF014223.1E-4380397IPR000967Zinc finger, NF-X1-type
SMARTSM004387.7E-4380399IPR000967Zinc finger, NF-X1-type
CDDcd060088.38E-7427475No hitNo description
PfamPF0142223437454IPR000967Zinc finger, NF-X1-type
SMARTSM004380.026437455IPR000967Zinc finger, NF-X1-type
PfamPF014220.53490505IPR000967Zinc finger, NF-X1-type
SMARTSM004384.1490521IPR000967Zinc finger, NF-X1-type
CDDcd060089.21E-7519568No hitNo description
PfamPF014227.1523549IPR000967Zinc finger, NF-X1-type
SMARTSM004380.021530551IPR000967Zinc finger, NF-X1-type
Gene3DG3DSA:3.30.70.3301.1E-4768819IPR012677Nucleotide-binding alpha-beta plait domain
TIGRFAMsTIGR007945.0E-2159681716IPR003855Potassium transporter
PfamPF027054.3E-1689701538IPR003855Potassium transporter
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0071805Biological Processpotassium ion transmembrane transport
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0000166Molecular Functionnucleotide binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0015079Molecular Functionpotassium ion transmembrane transporter activity
Sequence ? help Back to Top
Protein Sequence    Length: 1717 aa     Download sequence    Send to blast
MVRRSASIWS CSSCYSIFHL NCIKKWARAP TSIDLSAEKS QGFNWRCPGC QSVQLTSLKE  60
IKYVCFCGKR TEPPSDLYLT PHSCGEPCGK PLERRVPGAG ENKEDLCPHV CVLQCHPGPC  120
PPCKAFAPPR VCPCGKKIIT TRCSDRMSVL TCGQHCDKLL ECWRHRCEKI CHVGSCDPCQ  180
VLVSASCFCK KKVETVLCGD MAVKGEVKAE DGVFSCNLTC KKMLACGNHE CSNTCHPGPC  240
GDCDLMPGRV KSCYCGKTSL QLERKSCLDP IPNCDQICGK PLACRIHHCK EVCHAGDCPP  300
CLVLVTQKCR CGSTSRTVEC FKTSSENEKF ACEKPCGRKK NCGRHRCSER CCPISNLHNL  360
LTGDWDPHFC QMACGKKLRC GQHSCESLCH TGHCPPCLET IFTDLSCACG RTSIPPPLPC  420
GTPPPSCQLP CSVPQPCGHS ASHSCHFGDC PPCSVPIAKE CVGGHVVLGN IPCGSKDIRC  480
NKLCGKTRQC GLHACGRTCH PPPCDTSSSG IEAGPRASCG QTCGAPRRDC RHTCTALCHP  540
SSPCPDVRCE FPVTITCSCG RITASVPCDA GGSNSGFNAD TVFEASIVQK LPVPLQPVES  600
TGKKIPLGQR KLVCDDECAK LERKRVLADA FDITPNLEAL HFGENSAVTE LLSDLYRRDP  660
KWVLAVEERC KYLVLGKNRG SINGLKLHVF CPMLKDKRDA VRLIADRWKL AVYAAGWEPK  720
RFIVVHVTPK SKTPSRVIGV KGTTTLTAPH PPAFDPLVDM DPRLVVSFLD LPREADISSL  780
VLRFGGECEL VWLNDKNALA VFNDPARAAT AMRRLDHGSV YQGAVVVLQS GGASNAPANP  840
WGGTGNTKGG AVAALKPWKK AVVPEHGWRE DSWGSEEWSH GSVDVQASAW KGKEAPITAT  900
INRWSALDSE STSRTSATSV RIEDPAKLAA NSRMELNPSI STSSELPGGA SSQAELSEKE  960
TWRHTLMLSF QSLGVVYGRL STAPLYVFGT IPTEDFQSDS AFEYFSFIFW TLTAISLLKY  1020
AFLVLRADDN GEGGTFALYS LLCRHAKVGL LPDDRSTKEV MHHERGSPLR IKAESRARRA  1080
IEKYRSSHYL LLFSALFGAC LVIGDAVLTP SISVLSAFAG LQRALSQIKY VPVAFACAVL  1140
VCLFMLQHYG TRKIGFIFAP IVTIWILFIG GVGLYNIFHW NPKILGAISP VFMFKFVRNI  1200
DKKSWKSLGS ILLCVAGSEA MFADLGHFSK KSIQITFACL VYPLLVFCYA GQAAYISKHL  1260
HASEDFNHLS KSVPEHLGHV FIFLSLLASV IGSQATITAS FSIIKQCLAL GCFPRVKVVH  1320
TSNNLHGQVY IPDVNWLLMV LSLTVTIGFH DLHRIATSVG LAIVSGMVVT TCLMSLVIAL  1380
HWEKTLFISG CFLLFFGFVE SVYLSACMLN FHKGGWYLLV ISAVTFTVML AWHYGTKKKY  1440
EFDLQNKVPT EWLTDYSPGL GVCRVPGIGL IYTDIVSGIP AFFSHFITNL PAFHQVLIFV  1500
SFKSLPIPYV PPSERYLIGR VGSKDHKIYR CIVRYGYCDQ IRDTDDFEEQ IIRSIGEFIS  1560
LEENDSESLI SPEGRMMIVG KPSPDGKALI PLHDNNSINV GSANMANAET YKGAASDLIE  1620
KAGPLCRKKV RFMLPDNSPR MRVCVREELQ ELVNARESGT AYFLGQSHLE LRKDTNFVKK  1680
FLIMAYVFLD KNCREPPVAL NIPHAALVEV GIVCTI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012087618.10.0PREDICTED: NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLB9T6I00.0B9T6I0_RICCO; Potassium transporter
STRINGPOPTR_0012s04070.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69723145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1