PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G116800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ERF
Protein Properties Length: 211aa    MW: 23277 Da    PI: 8.363
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G116800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.36.9e-173988255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         +y GVr+++ +grWvAeI+d s   ++ r +lg+f+taeeAa a++ a++ l+g
  Manes.05G116800.1.p 39 RYLGVRQRP-SGRWVAEIKDSS---QKLRLWLGTFDTAEEAAMAYDGAARVLRG 88
                         689******.7*********42...36**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.4E-283996IPR001471AP2/ERF domain
PROSITE profilePS5103220.5213996IPR001471AP2/ERF domain
SMARTSM003807.9E-3239102IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-203996IPR016177DNA-binding domain
CDDcd000186.45E-303997No hitNo description
PfamPF008472.3E-113988IPR001471AP2/ERF domain
PRINTSPR003671.6E-84051IPR001471AP2/ERF domain
PRINTSPR003671.6E-86278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MEKENSPIFG HEALYSNPTT TLENGDERIK GKVNNGVRRY LGVRQRPSGR WVAEIKDSSQ  60
KLRLWLGTFD TAEEAAMAYD GAARVLRGRN AKTNFAYYGT SAIDPNEENC CRLLGKNPRL  120
YQLLRHAVLN NHARSSSAAD KVSVDRNFDK MVEERIVCSS DLDHDHGGSN KLCGVSFRTS  180
KVYSSVFVAP SFSSSSSLLC TGEENSCKEA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-143895159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A3e-1439971473Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G116800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021612898.11e-143ethylene-responsive transcription factor ERF086-like
TrEMBLA0A2C9VVC91e-155A0A2C9VVC9_MANES; Uncharacterized protein
STRINGcassava4.1_021161m1e-143(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123492734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.19e-19related to AP2 11