![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
Previous version:
v3.0
v4.0
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Manes.05G116800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 211aa MW: 23277 Da PI: 8.363 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.3 | 6.9e-17 | 39 | 88 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y GVr+++ +grWvAeI+d s ++ r +lg+f+taeeAa a++ a++ l+g Manes.05G116800.1.p 39 RYLGVRQRP-SGRWVAEIKDSS---QKLRLWLGTFDTAEEAAMAYDGAARVLRG 88 689******.7*********42...36**********************99998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 4.4E-28 | 39 | 96 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.521 | 39 | 96 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.9E-32 | 39 | 102 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-20 | 39 | 96 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 6.45E-30 | 39 | 97 | No hit | No description |
Pfam | PF00847 | 2.3E-11 | 39 | 88 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-8 | 40 | 51 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-8 | 62 | 78 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 211 aa Download sequence Send to blast |
MEKENSPIFG HEALYSNPTT TLENGDERIK GKVNNGVRRY LGVRQRPSGR WVAEIKDSSQ 60 KLRLWLGTFD TAEEAAMAYD GAARVLRGRN AKTNFAYYGT SAIDPNEENC CRLLGKNPRL 120 YQLLRHAVLN NHARSSSAAD KVSVDRNFDK MVEERIVCSS DLDHDHGGSN KLCGVSFRTS 180 KVYSSVFVAP SFSSSSSLLC TGEENSCKEA * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-14 | 38 | 95 | 1 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
5wx9_A | 3e-14 | 39 | 97 | 14 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Manes.05G116800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021612898.1 | 1e-143 | ethylene-responsive transcription factor ERF086-like | ||||
TrEMBL | A0A2C9VVC9 | 1e-155 | A0A2C9VVC9_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_021161m | 1e-143 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12349 | 27 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G19790.1 | 9e-19 | related to AP2 11 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Manes.05G116800.1.p |