PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G085600.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family WRKY
Protein Properties Length: 346aa    MW: 38792.9 Da    PI: 9.9313
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G085600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.93.2e-31279336359
                          -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ edp+++++ YegeHnh+
  Manes.05G085600.1.p 279 DDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCFEDPSMLIVSYEGEHNHP 336
                          99***********************9988****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105333.9E-18230275IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.8E-33265337IPR003657WRKY domain
PROSITE profilePS5081130.366272338IPR003657WRKY domain
SuperFamilySSF1182904.97E-27275337IPR003657WRKY domain
SMARTSM007745.7E-38277337IPR003657WRKY domain
PfamPF031069.3E-27279336IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MEEVEDANRA AVESCHRVLG LLSQPQDQVQ CRNLMVETGE AVFRFKRVIS LLNSSLGHAR  60
VRKLKKLMTP LSQSILLDNQ HHRTDLPCKN FQFVQSSSYL DGHPIQELGS NAKNSLCFEA  120
PSLELSSNGK NPLHLGQQTP SIHYQFLQQQ QRLQLQQQQQ MKQQAEMMFK RSNSGNILNF  180
DYSSCTPTIS SARSFISSLS IDGSVANLEG SAFHLNGAPR NSDQSSQLHK RKCSGRGEDG  240
SVKYGSSGRC HCSKKRKHRV KRSVKVPAIS NKLADIPPDD YSWRKYGQKP IKGSPHPRGY  300
YKCSSMRGCP ARKHVERCFE DPSMLIVSYE GEHNHPRIPS QTTNA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-20270339775WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G085600.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8275830.0KT827583.1 Manihot esculenta WRKY transcription factor 8 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021612054.10.0probable WRKY transcription factor 21
SwissprotO043361e-122WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLA0A140H8L20.0A0A140H8L2_MANES; WRKY transcription factor 8
STRINGcassava4.1_011038m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26373479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.17e-99WRKY DNA-binding protein 21
Publications ? help Back to Top
  1. Wei Y, et al.
    Genome-Wide Identification and Expression Analysis of the WRKY Gene Family in Cassava.
    Front Plant Sci, 2016. 7: p. 25
    [PMID:26904033]