PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G049500.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 357aa    MW: 41080.7 Da    PI: 6.2461
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G049500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.00053426123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C+ C k+Fs+   L  H+r+H
  Manes.05G049500.1.p  4 HRCKLCFKTFSNGRALGGHMRSH 26
                         79********************9 PP

2zf-C2H213.20.00026227249123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          y+C+ C+k+F++   L  H  +H
  Manes.05G049500.1.p 227 YRCETCKKVFKSYQALGGHRASH 249
                          9************9999998887 PP

3zf-C2H213.10.00029280302123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++Cp+C ++Fs+   L  H r+H
  Manes.05G049500.1.p 280 HECPYCYRVFSSGQALGGHKRSH 302
                          79******************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.2E-6327IPR007087Zinc finger, C2H2
SuperFamilySSF576675.88E-5330No hitNo description
PROSITE profilePS5015710.492431IPR007087Zinc finger, C2H2
SMARTSM003550.039426IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
PfamPF139126.3E-11227251IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.076227254IPR007087Zinc finger, C2H2
SuperFamilySSF576671.38E-7227302No hitNo description
SMARTSM003550.026227249IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280229249IPR007087Zinc finger, C2H2
PfamPF139126.6E-13280303IPR007087Zinc finger, C2H2
SMARTSM003550.2280302IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.39280302IPR007087Zinc finger, C2H2
PROSITE patternPS000280282302IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MERHRCKLCF KTFSNGRALG GHMRSHMLNL PIPPKLEDEE KEEHPPIQLC EDTESASSSE  60
EEAEEEDKSL CYELRENPKR SIRLVDPEFS FAADAASVLQ DRESETESSK NTTHRRRSKR  120
TRKLLEHEYH QQQHRQEHEN NIKKLNFSKF SKNELWAEPE PVSSISETTT EEDVAFCLMM  180
LSRDKWKKLE QQNQREEDEE VEDEKSIEET DESDEFKSCK TRTRGKYRCE TCKKVFKSYQ  240
ALGGHRASHK KLKVYTPTKE PNLQPLNAGT SSSAREKKIH ECPYCYRVFS SGQALGGHKR  300
SHLIGVTATP ARSSSKIEDN LNLIDLNLPA PVDDDELSQI ELSAVSDAEF VNHIKR*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G049500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021612301.10.0zinc finger protein ZAT4-like
TrEMBLA0A2C9VUU90.0A0A2C9VUU9_MANES; Uncharacterized protein
STRINGcassava4.1_031439m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.12e-54C2H2-like zinc finger protein